Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01112 ATGGCTTTTTTTTGTCCATGCTCGCCACTAGTGTTCAATCAAATGTGTGTGCTTGTATTCTTTAACCTCTCTACTTGTAGAGTTATTGTCGCAATTAATTGGAAGCGGTATCATTCTTGTACATATCCGTTGCACATATGGATTGTGGTCGACTACACTACTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTTTGTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCAAAGAACTGTTTGCCTAAAGATGGTCAAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGCTACTGTGGACTTATTTGCATTGCTTGCATGTCTCTGGGGAAGTGGTTGACACGAAGACAAGCTCATCTATTGCGTGCTCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAAGAAACACGGGGCATGGGACAAGATGCTGCCGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTTCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCCATCTGCTTAGAAGAGTTCTATGTGGGGAATGAGGTGCGTGGCCTGCCTTGTGCTCACAATTTTCATGTTGAATGCATCGATGAATGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTATTCCCAAACCTTGATCTTAGTGCGCTGTCCAATCTCCGTGCTGAGCCTGAGCGATCCTCTTCAAGTGTTGTAACAACGACCAGTTATGTGAGAGGCCAACCATCTAGTCAAAGTTACCGGTTAAGATTGCAGGGTCTTCTGCGTCCAGTCCGTGCTGAAATTGCTGGCCCTGGTGACATAGATAATGCGTTGGAAAATGCCGAGAACGATTTTGTATCAATTGTGACTCACAATGCATCATCTGGAGACAATGTCTCTACTGTCGAATGCGTGCCTGTCACTGTGAGACTTTCCTCTGCACAAAGTTAG 1158 0.4542 MAFFCPCSPLVFNQMCVLVFFNLSTCRVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPKDGQKWGFLIWLLFSYCGLICIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAEPERSSSSVVTTTSYVRGQPSSQSYRLRLQGLLRPVRAEIAGPGDIDNALENAENDFVSIVTHNASSGDNVSTVECVPVTVRLSSAQS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01112 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 285 IPR013083 -
Lapu3g01112 385 Pfam Ring finger domain 238 280 IPR001841 -
Lapu3g01112 385 FunFam E3 ubiquitin-protein ligase SIS3 207 285 - -
Lapu3g01112 385 SMART ring_2 239 279 IPR001841 -
Lapu3g01112 385 SUPERFAMILY RING/U-box 221 288 - -
Lapu3g01112 385 ProSiteProfiles Zinc finger RING-type profile. 239 280 IPR001841 -
Lapu3g01112 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 23 362 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01112 Lapu-Chr3 12000839 12009145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01112 62 363 C3H Transcription Factor Family AT3G47990 73.770 7.56e-159 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01112 K16284 - gmx:100812016 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01112 3 12000839 12009145 Lapu3g01112 3 12000839 12009145 ECH