Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01110 ATGAAGAACACAAAAACTACTATTACTGGTTCATCAAAACTTGATCGCAAAACTATTGAAAGGAACCGCAGAATCCACATGAAAGCTCTCTGCTTCAAGCTTGTTTCCATAATTCCTTCCAAGTACCTCAAACCCACCAAGGACATGCTTTCCCAACAGGATCAGCTTGATCTTGCAGCCACGTATATAAAGCATCTGAGAGAAAGAGTAGAGAAACTGAAGGGGGAGAAGGAGCAAGCCATGAGCATGATGAGAACAACACAACCCAATAACGGAATTTTCAATATTGACTCTCAGTTGCCTCTACTTGATATAAAGGATTTGGGTTCGGGCATTGAAGTGATGTTGATCAGTGGAGTGAATAAGAACTTCATGCTGTATGAAGTAATCAGTGTCCTTGAGGAAGAGGGTGCAGAAGTTGTCACTGCCAACTTCTCAACTGTTGCTGATAAGATCTTCTACACTGTTCATGCTCAGGTTAAAATATCAAGAGTTGGCGTGGAGCCAACGAGGGTATATCAAAGGCTTCAGGAATTGATTGCACCACTAGGAAGCTGGTGA 561 0.4225 MKNTKTTITGSSKLDRKTIERNRRIHMKALCFKLVSIIPSKYLKPTKDMLSQQDQLDLAATYIKHLRERVEKLKGEKEQAMSMMRTTQPNNGIFNIDSQLPLLDIKDLGSGIEVMLISGVNKNFMLYEVISVLEEEGAEVVTANFSTVADKIFYTVHAQVKISRVGVEPTRVYQRLQELIAPLGSW* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01110 186 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 86 IPR036638 GO:0046983
Lapu3g01110 186 FunFam Transcription factor bHLH162 3 93 - -
Lapu3g01110 186 Coils Coil 63 83 - -
Lapu3g01110 186 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Lapu3g01110 186 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Lapu3g01110 186 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 179 - -
Lapu3g01110 186 Gene3D - 4 92 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01110 Lapu-Chr3 11969412 11971156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01110 9 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.239 5.62e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g01110 HLH 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01110 - - vun:114179389 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01110 3 11969412 11971156 Lapu3g01110 3 11969412 11971156 ECH