Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01105 ATGGTGATAAGGTCGTGCTCAAATTTGTCTGACTTGGTATCTGAGGACAGTTTGCATTCCCCTCAAACTCCAGGAACTATTCCTCCTCAAACCTTGTTTGCTCCAGGAATTATGTCTGATGTTGATGGCAAACTGAGGGACAATGATGATTCAAATGCTTTCTCATTAGAACAACATCAGAAGATCATTATAGTAGCACATTTTCTTCCTCTCAATGCTCAAAAGGATAAAATGTCTGGCAAATGGTGCTTCACTTATGATGAAGATTCAATCTTGTTGCAATTAAAGGATGGTCTCTCTTCTAATACTGAAGTTTTTTATGTGGGTTCTCTGAATGTTGATGTTGATGCCAGTGAAGAAGAGAATGTTTCTCGTCAGCTACAGGAGAGATTCAATTGCTTGCCTACCTTTATTCCTTCAGAGCTCCACAAACAATTTTATGATGGATTCTGCAAGCGACATTTGTGGCCTCTATTCCATTACATGTTGCCCTTTAATCCAGACTGCGGCAACCGCTTTGACAAGTCACTGTGGCAAGCTTATGTTTCTGCTAACAAAATATTTGCTGATAAAGTCATGGAGGTTATTAATCCAGAGCTTGATTATGTATGGGTTCATGATTACCATCTCTTGGTCATTGCAACATTTCTCCGGAAGCGATACAGTTGGATCAAGCTAGGTTTTTTTCTCCACTCTCCATTTCCTTCATCAGAAATTTACCGGGCTTTACCTGTCAGAGATGAAATTTTGAAAGCACTGCTTAATGCAGATTTAATTGGTTTCCATACATTTGATTATGCTCGCCACTTTCTTTCTTGCTGCAGCCGAATTCTTGGATTAAAATATGAATCCAAAAGGGGTTACATCAAGCTTGAATACTTTGGCCGCATAATATTAATTAAAATCTTGCCTATAGGGATTAATATGATTCGACTTCGATCTGCCTTGAATCACCCTTCTTTTATATTCCATGTCAGAGAAATTAGGGAGAAGTTCAAGGGGAAAAAACTTATTCTTGGAGTTGATGATATGGACATTTTTAAGGGTATCAGCCTAAAGTTAATGGCCATTGAACAATTCCTTCATGAATATCCTGAATTGCTGGGTGAATTAATGCTTGTTCAGATTGTAAATCCACCGAGGAGTACTGGTAAGGATGTAGATGAGGCAAGGAATGAGATGCACATTATTGCCAACAGGATAAATGAAAGGTTTGGTTTCCCAGATTATAAACCTGTCATCATCATGGATCGTTATGTTCCGATATATGAGAAGGCATCCTACTATGCTTTAGCAGAATGTTGTATTGTAAATGCAGTGCGGGACGGTATGAATTTGGTTCCTTATGAGTACATTGTCTGCAGGCAGGGAAGTCCTAAAAGGGATGGAGCTTTACACATTGGTTTTGATCGCCCTCGAACAAGTGCACTTGTTGTTTCTGAGTTTATTGGTTGCTCACCATCTCTAAGTGGGGCAATCAGGGTAAACCCATGGGATATTAATGCTGTTGCCGATGCACTGAATTTGGCCATCAGAATGCCCAGTCGAGAGAAACAGTTGCGGCACGAGAAGAACTATCGATACATTAGTTCTCATGATGTAGCTTACTGGGCCAAAAGTTTTGTGCAAGATCTTGAGTACTCGTGCATGGATCACCACTGTAGAAATTGCTGGGGGATTGGCTTTGGCCTTAATTTCAGAGTTTTGTCCCTTTCTCCTACTTTCAGGAAGCTTAACAAAAACCATGCTGTTTCTTCATATACAAGGACAAATTGCAGGGCAATATTTTTGGATTATGACGGCACAGTTGTCCCTTCCATTGATAATACCCCAAGTCATGAAATTATAGATGTTCTAAATACCCTTTGCAGTGACCCTAAAAACATTGTTTTCATAGTAAGTGGCAGGGGAAAAACAACACTGAGTGAATGGTTTGATCAGTGTCAGAATCTCTGTATAGCAGCTGAGCATGGTTATTTTATAAAATGGAGACAGCAGTCAACTTGGGAAATGAATCATACAAGTATAGTCTCTTCTTGGAAAGAGATTGTTGAACCTGTGATGAGATTGTATACTGAGGCAACGGATGGCTCCTATATAGAGACCAAAGAGACTGCCTTGGTATGGCACTACTGTGATGCTGATCCCGAATTTGGACCTTGGCAGGCCAAGCAGCTGTTGGATCACCTTGAGTGTTTAGTTGCAAACGAACCAGTAACAGTAAAGAAGGGAAAACATATAATTGAAGTCAAGTCACAGGGGATCACTAAAGGGTTAGTTGTAGAGAACATTCTGTCCAAGATGACCAAGGATGGAAAATCTCCAGATTTTATACTGTGCATAGGGGATGATAGATCTGACGAGGACATGTTTGAGAGCTTGCTGAGTAAAGTTTACAGTGAAACAGCTCCTACTGCACCAGAAATCTTTGCATGTACTGTTGGTCAAAAACCAAGTAAAGCTAGGTACTATTTAGATGATACTGAGGATGTGGTGAGGTTACTTCAAGCTCTTAGTATCGTTTCAGACCCTGGATCGTCATGTCCTGAAGAAGACTCTCGTGGAGAATTAGAACCAGCCTGCTTCCTTTGA 2592 0.4032 MVIRSCSNLSDLVSEDSLHSPQTPGTIPPQTLFAPGIMSDVDGKLRDNDDSNAFSLEQHQKIIIVAHFLPLNAQKDKMSGKWCFTYDEDSILLQLKDGLSSNTEVFYVGSLNVDVDASEEENVSRQLQERFNCLPTFIPSELHKQFYDGFCKRHLWPLFHYMLPFNPDCGNRFDKSLWQAYVSANKIFADKVMEVINPELDYVWVHDYHLLVIATFLRKRYSWIKLGFFLHSPFPSSEIYRALPVRDEILKALLNADLIGFHTFDYARHFLSCCSRILGLKYESKRGYIKLEYFGRIILIKILPIGINMIRLRSALNHPSFIFHVREIREKFKGKKLILGVDDMDIFKGISLKLMAIEQFLHEYPELLGELMLVQIVNPPRSTGKDVDEARNEMHIIANRINERFGFPDYKPVIIMDRYVPIYEKASYYALAECCIVNAVRDGMNLVPYEYIVCRQGSPKRDGALHIGFDRPRTSALVVSEFIGCSPSLSGAIRVNPWDINAVADALNLAIRMPSREKQLRHEKNYRYISSHDVAYWAKSFVQDLEYSCMDHHCRNCWGIGFGLNFRVLSLSPTFRKLNKNHAVSSYTRTNCRAIFLDYDGTVVPSIDNTPSHEIIDVLNTLCSDPKNIVFIVSGRGKTTLSEWFDQCQNLCIAAEHGYFIKWRQQSTWEMNHTSIVSSWKEIVEPVMRLYTEATDGSYIETKETALVWHYCDADPEFGPWQAKQLLDHLECLVANEPVTVKKGKHIIEVKSQGITKGLVVENILSKMTKDGKSPDFILCIGDDRSDEDMFESLLSKVYSETAPTAPEIFACTVGQKPSKARYYLDDTEDVVRLLQALSIVSDPGSSCPEEDSRGELEPACFL* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01105 863 NCBIfam HAD-IIB family hydrolase 594 793 IPR006379 -
Lapu3g01105 863 NCBIfam trehalose-phosphatase 593 838 IPR003337 GO:0003824|GO:0005992
Lapu3g01105 863 FunFam Alpha,alpha-trehalose-phosphate synthase 315 530 - -
Lapu3g01105 863 CDD GT20_TPS 61 546 IPR001830 GO:0003824|GO:0005992
Lapu3g01105 863 SUPERFAMILY HAD-like 593 838 IPR036412 -
Lapu3g01105 863 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 547 - -
Lapu3g01105 863 Gene3D - 673 753 - -
Lapu3g01105 863 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 592 707 - -
Lapu3g01105 863 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 52 838 IPR001830 GO:0003824|GO:0005992
Lapu3g01105 863 Pfam Glycosyltransferase family 20 61 546 IPR001830 GO:0003824|GO:0005992
Lapu3g01105 863 Pfam Trehalose-phosphatase 596 828 IPR003337 GO:0003824|GO:0005992
Lapu3g01105 863 Gene3D Glycogen Phosphorylase B; 316 530 - -
Lapu3g01105 863 FunFam Trehalose-6-phosphate synthase 10 721 849 - -
Lapu3g01105 863 FunFam Trehalose-6-phosphate synthase 2 674 753 - -
Lapu3g01105 863 Gene3D Glycogen Phosphorylase B; 48 315 - -
Lapu3g01105 863 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 313 - -
Lapu3g01105 863 CDD HAD_TPP 594 833 - -
Lapu3g01105 863 Gene3D - 595 825 IPR023214 -
Lapu3g01105 863 MobiDBLite consensus disorder prediction 844 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01105 Lapu-Chr3 11871817 11874732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01105 1 850 Trehalose Biosynthesis Gene Families AT1G23870 63.850 0.0 1160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01105 K16055 - gmx:100808800 1460.66