Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01101 ATGCGCAGCATTCAGATTGAAACGAAGCAAAATGGTGGAGTGAAGTACTCATATGAGTCATATCCTCAATCTCCTTTCTCAGCATACCAAGCTCCTAACGATGGTAACACTACCAACGAGAAAGAAGCAACAACGCCATCATCTCTCAGCAGAATCAGTCCACTCATTTTGCTGGTCATAATTGTTCTAGCAGTTATCTTCTTCGTGTACGGACTTGTCCATTTGGTTCTATGGTTTTTCATGAAAACATCAACCCCTTCATCAATCTACAACTCCAACAGGTTCCACGAATCCACGCGCTCACGTGTTCTTCAGAGGCAGCTTCAACAACTCTTCCGATTGCACGATTCAGGTCTAGACCAAGCCCTCATAGACGCTCTACCCGTTTTCCATTACCAAGATTTGCTGGGTTCAAAGGAACCGTTTGATTGTGCCGTGTGTTTATGCGAGTTCTCCGAGGACGACAAACTGAGGCTGCTTCCTATGTGCACACACGCGTTTCACATGAACTGTCTTGACACGTGGCTTCTCTCGAATTCCACGTGTCCTCTTTGCAGGGCGTCTCTCTCCAACTACGTGGAGAATCAGAATCATCAGAATCCAATGTTGTTTAATGTTGGCATAGGCAATTCCAATTCTTTGGTTCTGCCAAGTGGGTTCAGAGGTGAGGAAGAGAACGGGTGTTCAGAGAGTGAAAGATCAGTGGGGAAAAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAACGATGGGTTGGAGTTAGGGAGTGGAGAGGCAGGAGGGGATGGTAGTTGCAGTTTGAATGAGAGGAGATGCTACTCCATGGGTTCATATAGGTATGTGGTTCGTGATTCGAATCTGCAAGTGGTGTTGTCGGAATCTGGTGATGTTTCTGAAAATGAAAACGTGGAGGGAAAGAGGATAAGCGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAACACCAGATTTCATGGTTCTAATGCAGCTCTCCCTTAA 1020 0.4578 MRSIQIETKQNGGVKYSYESYPQSPFSAYQAPNDGNTTNEKEATTPSSLSRISPLILLVIIVLAVIFFVYGLVHLVLWFFMKTSTPSSIYNSNRFHESTRSRVLQRQLQQLFRLHDSGLDQALIDALPVFHYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLSNYVENQNHQNPMLFNVGIGNSNSLVLPSGFRGEEENGCSESERSVGKRVFSVRLGKFRNDGLELGSGEAGGDGSCSLNERRCYSMGSYRYVVRDSNLQVVLSESGDVSENENVEGKRISDSTKGESFSVSKIWLWSKNTRFHGSNAALP* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01101 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 195 IPR013083 -
Lapu3g01101 339 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Lapu3g01101 339 Pfam Ring finger domain 143 186 IPR001841 -
Lapu3g01101 339 SMART ring_2 144 185 IPR001841 -
Lapu3g01101 339 CDD RING-H2_EL5-like 143 186 - -
Lapu3g01101 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 323 - -
Lapu3g01101 339 FunFam RING-H2 finger protein ATL46 106 191 - -
Lapu3g01101 339 SUPERFAMILY RING/U-box 123 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01101 Lapu-Chr3 11849698 11850717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01101 50 336 C3H Transcription Factor Family AT2G18650 41.212 4.07e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01101 - - vum:124828898 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01101 3 11849698 11850717 Lapu3g01101 3 11849698 11850717 ECH