Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01084 ATGGCTATCGCCGGCGATATCTTCCGCCACAACTTAACGGAATTTCTCGAGGACTCCCCTTCTGGTGTGCCGGAGCTTCACGTTCTTGCGGTCGACGACAGCTTCGTTGATCGCAAGGTCATCGAACGGTTGCTTAAGATTTCTTCCTGCAAAGTGACGGTTGTGGAGAGTGCAACGCATGCTCTTCAGTATTTGGGCTTGGACGGAGACAACAGTTCTCTCGGGTTCGATAGTGTGAAGGTTAATCTCATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTGCTTAAGAAAATCAAGCAGGAGTCTTCCGTGTTTAGAGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTTTTGACTCGAATTGATAGATGCCTGGAGGAAGGGGCCGAGGAGTTTCTGTTGAAACCTGTCAAATTGTCAGACGTAAAACGCTTAAAAGATTTCATCATGAAAGGGAAAGTGAAGGAAGTTGAGAAAATATCTCTCAAAAGAATGCGGTCAATTGATTGCAGTGCACCTCTATCTGCAACTTGCTCACCCATATCTTTTCCATGCGACTCATCAACATCATTACTCTCACCATTATCCTCAAAGAAAGCTAGATTGTGA 624 0.4535 MAIAGDIFRHNLTEFLEDSPSGVPELHVLAVDDSFVDRKVIERLLKISSCKVTVVESATHALQYLGLDGDNSSLGFDSVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEEFLLKPVKLSDVKRLKDFIMKGKVKEVEKISLKRMRSIDCSAPLSATCSPISFPCDSSTSLLSPLSSKKARL* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01084 207 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 158 IPR045279 GO:0009736
Lapu3g01084 207 SMART REC_2 26 151 IPR001789 GO:0000160
Lapu3g01084 207 CDD REC_typeA_ARR 28 150 - -
Lapu3g01084 207 Gene3D - 26 177 - -
Lapu3g01084 207 ProSiteProfiles Response regulatory domain profile. 27 155 IPR001789 GO:0000160
Lapu3g01084 207 Pfam Response regulator receiver domain 28 147 IPR001789 GO:0000160
Lapu3g01084 207 SUPERFAMILY CheY-like 25 155 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01084 Lapu-Chr3 11645402 11647281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01084 26 169 Response Regulator Gene Family AT3G48100 77.931 6.80e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu3g01084 Response_reg 2.1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01084 K14492 - gmx:100527518 330.102