Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01078 ATGTCTCGCGCCTGCGCCGCTACAGACTCCGTCGCCTCCGGCGAGATCATGCTGTTCGGGGTTCGTGTCGTCGTCGATTCTATGAGGAAGAGCGTCAGCATGAACAACCTCTCACAGTACGAGCATCCGCAAGACGCTAACAACAACAACAACAGCAACAACAAGGATGTTCTGGCCGTCGGTTATGCCTCCGCCGATGATGCTGTTCCTCATAACTCCGGCCGCCACCGCGAGCGCGAGCGGAAGCGAGGGGTTCCGTGGACGGAGGAAGAGCACAAACTGTTTTTGGTTGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTACGTGAAAACGCGAACTCCGACGCAGGTTGCGAGCCATGCTCAGAAGTACTTTCTCCGCAGAAGCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTCGACATCACCACCGACACGGTCTCTGCAATTCCAATGGAGGAAGAACAGGTCCAGAATCAAGACACCCTGTCTCATTCGCAACCTGTGTGCCCTGCGGTCCCGGAAACTAGCAAAAGTGGATTTCCAATGATGCCAGTTTATCAGTTTGGGGTTGGTTCTGGGGTGATTTCAGTCCAAGGTGGGAACCCATTGGAAGAACTCACTCTGGGACAAGGAAACATAGAAAACAATGTGCCAATAAGTCTAGTCCGTACAACTCCTGTTGTTGCAGATCCTAAAGCATCCGCAGTGTCTGATATCATCACCCCAAGTTCTAGTTCTGCTGTTGACCTACCCACACTGTCCTTGGGGCTATCCTTCTCTTCTGACCAAAGGCAAACATCATCAAGACATTCAGCTTTACATGCCATACCATGTTTCAGCAATGGAGATAGCATCATTAGTGTTGCTTAA 894 0.5123 MSRACAATDSVASGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDANNNNNSNNKDVLAVGYASADDAVPHNSGRHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVQNQDTLSHSQPVCPAVPETSKSGFPMMPVYQFGVGSGVISVQGGNPLEELTLGQGNIENNVPISLVRTTPVVADPKASAVSDIITPSSSSAVDLPTLSLGLSFSSDQRQTSSRHSALHAIPCFSNGDSIISVA* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01078 297 PANTHER TRANSCRIPTION FACTOR KUA1 2 226 - -
Lapu3g01078 297 CDD SANT 86 131 IPR001005 -
Lapu3g01078 297 Pfam Myb-like DNA-binding domain 86 131 IPR001005 -
Lapu3g01078 297 ProSiteProfiles SANT domain profile. 82 135 IPR017884 -
Lapu3g01078 297 MobiDBLite consensus disorder prediction 66 85 - -
Lapu3g01078 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 135 IPR017930 -
Lapu3g01078 297 Gene3D - 85 137 - -
Lapu3g01078 297 SMART sant 83 133 IPR001005 -
Lapu3g01078 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 133 IPR006447 GO:0003677
Lapu3g01078 297 FunFam transcription factor MYB1R1 85 136 - -
Lapu3g01078 297 ProSiteProfiles Myb-like domain profile. 79 131 IPR001005 -
Lapu3g01078 297 SUPERFAMILY Homeodomain-like 81 136 IPR009057 -
Lapu3g01078 297 MobiDBLite consensus disorder prediction 70 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01078 Lapu-Chr3 11565671 11567992 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu3g01078 Myb_DNA-binding 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01078 - - gmx:780536 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01078 3 11565671 11567992 Lapu9g00641 9 7600194 7603862 PCT