Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01075 ATGGAACCTCCCCTCATCAACGACGTCACATTCTCTTCTGCCAACCCTTCCTTGTCCGAGATTTGGCCCTCGCAGTTCCCCTCCTCCAACAAGAGACCCTCTTCTCTTCTGCTTCACAATCACTCTCCCAACAGTAACAAACACCTTAAGCTATCACCACCCTCTCACACACTCCAAAACGCTGCGTTCCAGGCGCCTCAACCCGACGCCTCTTCCGTAGCCGCTCACAACTCACCTCTTCAAACTCCCAAACCCAAGCAGGACTTCATACACGTGCGAGCAAGAAGAGGCCAAGCCACCGATAGCCACAGCCTCGCCGAAAGAGCTAGAAGGGAAAAGATCAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCCGGGTGTAGCAAGGTAATTGGTAAAGCGCTTGTCCTGGATGAGATAATTAATTACATCCAGTCACTGCAGCGTCAGGTGGAGTTCCTTTCAATGAAGCTTGAGGCAGTTAATTCGAGATTGAGTATGAACCCTTCTGTTGAATGTTTTTCTTCAAAAGAAGTTGGCACTCAGCCATTTGACCTTTCAGGAATAATACTCGGATCGGCCAGAGGATATGCTCAAGGATCACAGGCTGGATGGCTGCATATGCAGGTATCTGGTGGTTTTGAGAAAGTAACATAA 660 0.4848 MEPPLINDVTFSSANPSLSEIWPSQFPSSNKRPSSLLLHNHSPNSNKHLKLSPPSHTLQNAAFQAPQPDASSVAAHNSPLQTPKPKQDFIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCSKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLSMNPSVECFSSKEVGTQPFDLSGIILGSARGYAQGSQAGWLHMQVSGGFEKVT* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01075 219 MobiDBLite consensus disorder prediction 8 84 - -
Lapu3g01075 219 MobiDBLite consensus disorder prediction 1 85 - -
Lapu3g01075 219 Coils Coil 145 165 - -
Lapu3g01075 219 SMART finulus 104 154 IPR011598 GO:0046983
Lapu3g01075 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 166 IPR036638 GO:0046983
Lapu3g01075 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 148 IPR011598 GO:0046983
Lapu3g01075 219 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 54 189 IPR024097 GO:0006355
Lapu3g01075 219 Gene3D - 95 172 IPR036638 GO:0046983
Lapu3g01075 219 CDD bHLH_AtBPE_like 88 171 - -
Lapu3g01075 219 FunFam Basic helix-loop-helix transcription factor 95 168 - -
Lapu3g01075 219 Pfam Helix-loop-helix DNA-binding domain 102 149 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01075 Lapu-Chr3 11526350 11546952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01075 1 38 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 56.098 9.26e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g01075 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01075 - - vra:106766826 372.474