Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01068 ATGGACGACGGCGATCCTTCCCTGTCCGATCAAGAGGAGGAGAACGATGAGGAAGACGTGGCGGACATTCTGTTGCGAATTCCGATCGTCGATGCTCCCATACTCTTCTTTGTTTGCTTCCACAAGTCTTTTCGCTCTGAGCTCGATCAACTTCGTCGCTTGGCGGAAACGGCGTCGTTGGAGGACGACCCACGCCGTTGCCGGCAAATGATCCTTCAGCTTCAACGTAGGTTCCAGTTTCTGAAACTAGCTCATAAATATCACTGTGCTGCGGAAGATGAGGTTATCTTTCTTGCACTGGATGCTCATGTGAAAAATATCGTATGTACATATTCGCTTGAACATAACAGCACCTCAGACCTTTTTGGATCTGTTTTTCACTTCTTGGAAGAGCTGATGGTTCCTAAAGAGAATATTTCCAAGCTGTTCCAAGAACTTGTGTACTGTATTGGTATCTTACAAACCTACATCTACAAACATATGCTGAAAGAAGAAAAGCAGGTTTTTCCCCAGTTGATGCGGAAATTATCAACCGAAGAACAGGCTTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATATTTCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCTGCAAGCAAACAGTCAGAAGTTACCCAGTGTTTAAATGAAATTGCACCAATGGAAAAAGCATTGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAACAAACAAACCTTTACTGAGACCTGTTTTCAGAGTGGAGAATTTCAAGGTGTAGATGGTTTCCTACATATAGAAAGATCACTAGAGCTGAGTTGTAATAGGAAAACCGAGGAAATTTCAAGTCTGATCGAAGTGAATGGCCGAGTAATAGAAGATGATGGGGCCAACCAGGTTAATGTTCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCTGAAAGAACTTTACCTACTAAGAAAATCCAGCTGTTTTCAGAATTTAGACTCAATACTTATCCAACTAAAATTCTTTGCCGATGTCCTCATCTTCTACAGCAATGCTCAGAAGAAATTTTTTCATCCTGTACTGAGTAAATATGCTTATGGCTGGTTGTCCAAGTCCATTGAACAATTTCTTGGTGAAAGTAACATTGAAGATATACAGCAGTTGCTATTCTATAACTCAGAAAGTGGAATACCTTTGAGCAAGTTCGTGGAGAAGCTTTGCCAAAAACTTGAATTATTTGTATCAGGAGTCAACAAACAATTTGTTTTTCAAGAAAATGAGGTATTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAAGAGAGACTTCTAAGCTTGAGCCTACATATGATGCCTCTGGGGTTACTAAAATGTGTTATAACTTGGTTTTCAGTTCGCTTGTCTGAAAAAGAGTCCAGGTCCATTCTCTATTGCATAAAGAAAGGAAACAATTCTGTCGGTAAAGCTTTTTCATCACTGTTACACGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCTATTGAAAAGTTCAGACTAGACTTACAACATATGTTCAAAAGAAGATGCTTTCTTTCACCTGAACAAATTAAGGAAGCTCATGGATTTTCTTTCTTGAATTCTGAGAAGCAGCCTCATAATGTCTCTGACCAGAATTCTTTGTCCTGTTCCTCCTCGTCTGGATCCAGCAATGTAAACAAGTATGAGATACCATACTCCACAGGAATTAATCTGCACATATTTTTTCCTGCCACAGTGGGGAAGTTACATCAGTATCCTGGATTACATGCACCAGAACGATCTTCTATTTCCTTTCTTGATGATCCAAAGCCAATTGACCTAATATTTTTCTTTCACAAAGCTATCAAGAAGGATTTGGAGTTCCTAGTTCTTGGCTCAGCCCAGTTAGAAAAAAATGATAAGTTGCTTATGGATTTCCAAAAACGATTCCATCTCATATATTTTCTTCATCAAATCCACAGTGATGCAGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCAAGAGGAAAACTAAAAAACATTAGCCATGCCTACACTTTTGATCACAAGCATGAAGTTGAACACTTTAATAAAATATCTCGCATCCTTGATAAGATGTCTAGATTACATCTTTCAGTTTCTACAATTGATTCAAATATAAAGGAGACGGGACTGCTAAGGTATCAGCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGCATACATCGCTTTCCAATCACATAAACCGTGAGGAAATAGAAATTTGGCCTATAATTAGAAAATTCTTCACAAATCAGGAGCAAGGGAAGATCATGGGATGCATGCTTGGAAGAATAAAAGCAGAAATATTACAGGATATGATACCTTGGCTAATGGCATCTTTGACACAGGAAGAACAACATGTTTCAATGTTCTTATGGTCCATGGCTACTAAAAATACGATGTTTGATGAATGGTTAGGGGAATGGTGGGATGGGTACAGTTTAGCTAAGGTAACAGAGGGCTCAAACGATGCCCCTGTTCAGCCTGTTGAGCCACTGGAGATTATATCCAAATATTTATCTGAAGAAATTCTAAATGAATTACAAGAAGAATCATCTGCCAACAAAAGCATAATTTTTTTGGAGAAGGATCGTATTGGTGATAATGTTGAGCTGTCTAACTACAACCACAATGATAAAGTTAAGGTTCATAATACAGAACAAAATAATAATCAATGTTCAAAACAAACAAATCATTTTCATGATCACGACAAACATGCTTGCAATGAGGTAGCAGATATCATAAATCCGGTAGTCAATGAAGGTAAGTCTTCTAAACTTCGTGACAAGCCTGGGCGTTATGACCGACTTTTGAAATTGAGCCAAGATGATTTGGAGACGGTGATAAGAAGGGTGTGTCGTGACTCTTGCTTAGATCCTCAGAAAAAGTCGTACATAATACAGAACCTACTGATGAGCCGTTGGATTATTAGACAGCAGATCTCTTCTACAGAACTCAATATAAAAAATGATGAACCGGAATTTCCTGGGAATCATCCATCTTACAGGGATCCTCTCAAACTAATCTACGGTTGTAAACACTACAAGAGGAATTGTAAGCTTTTTGCTCCATGTTGCAACCAACTTCATACCTGCATACATTGTCATAACGACGAATCAGATCATTCAATTGATAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGGTGATTCAACCAATCAGTGCCACATGCTCAACAATTTCTTGTAATTTATCGATGGCAAAATATTACTGCAGAATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCACTGTCCTTACTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAATTGCAATGCTTGTATGTCCCGTTCTCTTATGATGCATACATGCAGGGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCGGTAAAAGCCCTCCCATGTGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACAAGCTTTAATTATATCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTATATTTTAAGATGTTAGATGCGTTATTGGCTGAAGAGAGAATTTCTGGTGAGATTTCAGGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAGCGACCCCCTTCCACTGGCTCTACCACAAATGCCCTAGCTGTGGTTCCTACAACACTAGAGTTCTGTGA 3789 0.3882 MDDGDPSLSDQEEENDEEDVADILLRIPIVDAPILFFVCFHKSFRSELDQLRRLAETASLEDDPRRCRQMILQLQRRFQFLKLAHKYHCAAEDEVIFLALDAHVKNIVCTYSLEHNSTSDLFGSVFHFLEELMVPKENISKLFQELVYCIGILQTYIYKHMLKEEKQVFPQLMRKLSTEEQASLVWQFICSVPIIFLEEVLPWMVSFLSASKQSEVTQCLNEIAPMEKALQEVLVSWLRSNKQTFTETCFQSGEFQGVDGFLHIERSLELSCNRKTEEISSLIEVNGRVIEDDGANQVNVLHLWHNAIKKDLKEILKELYLLRKSSCFQNLDSILIQLKFFADVLIFYSNAQKKFFHPVLSKYAYGWLSKSIEQFLGESNIEDIQQLLFYNSESGIPLSKFVEKLCQKLELFVSGVNKQFVFQENEVFPIFRKNCRNGMQERLLSLSLHMMPLGLLKCVITWFSVRLSEKESRSILYCIKKGNNSVGKAFSSLLHEWFRIGYSGKTSIEKFRLDLQHMFKRRCFLSPEQIKEAHGFSFLNSEKQPHNVSDQNSLSCSSSSGSSNVNKYEIPYSTGINLHIFFPATVGKLHQYPGLHAPERSSISFLDDPKPIDLIFFFHKAIKKDLEFLVLGSAQLEKNDKLLMDFQKRFHLIYFLHQIHSDAEDEIVFPALEARGKLKNISHAYTFDHKHEVEHFNKISRILDKMSRLHLSVSTIDSNIKETGLLRYQHLCRKLQEMCKSMHTSLSNHINREEIEIWPIIRKFFTNQEQGKIMGCMLGRIKAEILQDMIPWLMASLTQEEQHVSMFLWSMATKNTMFDEWLGEWWDGYSLAKVTEGSNDAPVQPVEPLEIISKYLSEEILNELQEESSANKSIIFLEKDRIGDNVELSNYNHNDKVKVHNTEQNNNQCSKQTNHFHDHDKHACNEVADIINPVVNEGKSSKLRDKPGRYDRLLKLSQDDLETVIRRVCRDSCLDPQKKSYIIQNLLMSRWIIRQQISSTELNIKNDEPEFPGNHPSYRDPLKLIYGCKHYKRNCKLFAPCCNQLHTCIHCHNDESDHSIDRKSITKMMCMKCLVIQPISATCSTISCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMMHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTSFNYICPICSKSLGDMQVYFKMLDALLAEERISGEISGQTQVILCNDCEKKGATPFHWLYHKCPSCGSYNTRVL* 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01068 1262 SUPERFAMILY RING/U-box 1143 1203 - -
Lapu3g01068 1262 SUPERFAMILY CHY zinc finger-like 1019 1084 IPR037274 GO:0008270
Lapu3g01068 1262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1149 1200 IPR013083 -
Lapu3g01068 1262 Gene3D - 1227 1262 - -
Lapu3g01068 1262 Pfam Ring finger domain 1154 1197 IPR001841 -
Lapu3g01068 1262 Coils Coil 41 61 - -
Lapu3g01068 1262 Gene3D nmb1532 protein domain like 607 779 - -
Lapu3g01068 1262 Gene3D nmb1532 protein domain like 293 445 - -
Lapu3g01068 1262 Gene3D nmb1532 protein domain like 33 190 - -
Lapu3g01068 1262 Pfam CHY zinc finger 1028 1102 IPR008913 GO:0008270
Lapu3g01068 1262 SUPERFAMILY Zinc hairpin stack 1093 1147 IPR037275 -
Lapu3g01068 1262 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 656 1262 - -
Lapu3g01068 1262 CDD Hr-like 613 759 - -
Lapu3g01068 1262 Pfam Zinc-ribbon 1203 1260 IPR039512 -
Lapu3g01068 1262 FunFam Zinc finger protein-related isoform 1 1151 1200 - -
Lapu3g01068 1262 CDD Hr-like 40 170 - -
Lapu3g01068 1262 ProSiteProfiles Zinc finger CTCHY-type profile. 1092 1155 IPR017921 -
Lapu3g01068 1262 ProSiteProfiles Zinc finger RING-type profile. 1156 1198 IPR001841 -
Lapu3g01068 1262 Pfam Hemerythrin HHE cation binding domain 41 172 IPR012312 -
Lapu3g01068 1262 ProSiteProfiles Zinc finger CHY-type profile. 1021 1090 IPR008913 GO:0008270
Lapu3g01068 1262 CDD RING-H2_Pirh2-like 1155 1198 - -
Lapu3g01068 1262 SMART ring_2 1156 1197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01068 Lapu-Chr3 11439291 11450702 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01068 32 854 C2H2 Transcription Factor Family AT3G18290 33.296 1.54e-126 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01068 K16276 - gmx:100802706 2291.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01068 3 11439291 11450702 Lapu3g01068 3 11439291 11450702 ECH