Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01057 ATGGAAATGGGGACTGGAGCATGGATTTCTTTGGTGATTATGGTCACATTTTTCTGCCCTTCTTCGCTTTCTCTCACCCAGGATGGTCTGGCCTTGTTGGAAATCAAAAGTACTTTGAATGATACTAAGAGTGTTCTGAGCAACTGGCAAGAGTTTGATGAGACTCATTGTGCATGGACTGGTATCTCTTGTCACCCTGGCGATGAACAAAGAGTTCGCTCAATAAATCTGCCATACATGCAACTTGGAGGAATTATATCTCCCAGCATTGGTAAACTCAGTAGACTACAAAGATTGGCACTTCATCAGAACAGCTTGCATGGAACCATTCCTAATGAACTTACCAATTGTACCGAGCTCAGAGCACTGTACTTGAGGGGTAATTTTTTCCAAGGAGGCATACCGTCAAACATTGGAAATCTTTCATATTTAAATATACTGGATTTATCAAGTAACTCGTTAAAAGGGGCTATACCTTCCTCTATTGGCCGTCTCTCACATTTGCACATTCTGAACTTGTCTACCAATTTCTTTTCCGGTGAAATTCCTGACATTGGAGTATTAAGCACCTTTGACAAGAACTCGTTTAATGGAAATTTAGATCTTTGTGGGCGGCAAGTCCAAAAGCCATGTCGGACATCACTTGGTTTTCCTGTGGTGCTGCCCCATGCTGAAAGTGATGAAGCTGCAGTCCCTACCAAAAGGTCTTCACATTACATGAAGGGGGTGCTAATTGGTGCAATGGCAACTATGGGTCTGGCACTTGTCATGATCCTTTCATTCCTCTGGACTCGTTTGTTATCAAAGAAGGAACGAGCTGCGAAGAGATACACGGAAGTCAAGAAACAAGTTGATCCCGAAGCAAGCACAAAACTTATCACTTTCCATGGTGATCTGCCATACACATCATCTGAGATCATAGAGAAGCTGGAGTCTCTAGATGAAGAGCACATAGTAGGATCAGGAGGATACGGTACTGTTTACCGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAACGGATTGATCGAAGTTGTGAAGGGTCTGATCAAGTGTTTGAAAGGGAACTAGAGATCTTGGGGAGCATCAAGCACATAAACCTTGTAAATATGCGTGGTTACTGCAGGCTTCCTTCTTCAAGACTCCTTATCTATGACTATTTGGCATCAGGCAGCTTAGATGATCTTTTGCATGAAAATACTCAACAAAGACGACTATTGAACTGGAGTGATCGCCTAAAGATAGCTCTTGGTTCTGCCCGGGGGTTGGCCTACTTGCACCATGAATGCAGCCCAGAAATAGTTCATCGTGACATAAAATCTAGCAACATACTCCTTGATGAAAACATGGAGCCACATATATCTGATTTTGGCCTTGCAAAGCTTTTGGTTGATGAAGAGGCCCATGTTACCACGGTGGTAGCTGGCACATTTGGTTATTTGGCACCAGAGTATCTACAAAGTGGAAGAGCAACTGAGAAGTCAGACGTATATAGCTTTGGAGTTCTATTACTCGAACTTGTAACTGGAAAGAGGCCAACAGATCCTTCCTTTGTAAAAAGAGGTTTAAATGTTGTTGGTTGGGTGAACGCATTACTGAGAGATAACAGATTGGAAGACGTGGTGGACAAAAGATGCAGTGATGCAGATGTAGGAACCCTTGAAGTAATTCTTGAGCTAGCAGCAAGGTGCACAGATGGAAATGCAGATGATCGTCCAACAATGAACCAGGTGTTACAGTTGCTGGAACAAGAGGTCATAAGTACAGTATGTTCATGGCTCAAATAG 1791 0.4277 MEMGTGAWISLVIMVTFFCPSSLSLTQDGLALLEIKSTLNDTKSVLSNWQEFDETHCAWTGISCHPGDEQRVRSINLPYMQLGGIISPSIGKLSRLQRLALHQNSLHGTIPNELTNCTELRALYLRGNFFQGGIPSNIGNLSYLNILDLSSNSLKGAIPSSIGRLSHLHILNLSTNFFSGEIPDIGVLSTFDKNSFNGNLDLCGRQVQKPCRTSLGFPVVLPHAESDEAAVPTKRSSHYMKGVLIGAMATMGLALVMILSFLWTRLLSKKERAAKRYTEVKKQVDPEASTKLITFHGDLPYTSSEIIEKLESLDEEHIVGSGGYGTVYRMVMNDCGTFAVKRIDRSCEGSDQVFERELEILGSIKHINLVNMRGYCRLPSSRLLIYDYLASGSLDDLLHENTQQRRLLNWSDRLKIALGSARGLAYLHHECSPEIVHRDIKSSNILLDENMEPHISDFGLAKLLVDEEAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWVNALLRDNRLEDVVDKRCSDADVGTLEVILELAARCTDGNADDRPTMNQVLQLLEQEVISTVCSWLK* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01057 596 Gene3D Phosphorylase Kinase; domain 1 273 388 - -
Lapu3g01057 596 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 585 - -
Lapu3g01057 596 Gene3D Transferase(Phosphotransferase) domain 1 389 592 - -
Lapu3g01057 596 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Lapu3g01057 596 Pfam Protein kinase domain 315 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01057 596 SUPERFAMILY L domain-like 26 186 - -
Lapu3g01057 596 SUPERFAMILY Protein kinase-like (PK-like) 294 584 IPR011009 -
Lapu3g01057 596 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Lapu3g01057 596 SMART serkin_6 313 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01057 596 Gene3D Ribonuclease Inhibitor 25 213 IPR032675 -
Lapu3g01057 596 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Lapu3g01057 596 ProSiteProfiles Protein kinase domain profile. 313 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01057 596 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 389 594 - -
Lapu3g01057 596 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01057 Lapu-Chr3 11316999 11325038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01057 7 589 Receptor kinase-like Gene Family AT2G35620 48.714 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Lapu3g01057 Pkinase 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01057 - - gmx:100803920 1104.35