Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01056 ATGGCGGCTGGAAGGGCCTTTTCCGACATCACTACCTTCCTTCGCAACCAAACCGCTCCTCCCAATTCCCAACCTCTCGATTCTCTCTTCTTCTCTCCTTCTGCTGCTCCTTTTCTCGGTTCGAGATCCATGATGAGTTTCGAAGGAGAAGGAGGGAAGGGGTGTAAAGGTTCCTTCTTCCGCGCGTTTGATGTAGACGAGAATGGAGATGAGTGCATGGACGAGTACTTTCATCAACCTGAGAAGAAGCGCCGTCTCTCTGCCAACCAAGTTCAGTTTCTCGAGAAGAGCTTCGAGGAAGAGAACAAGCTTGAACCCGACAGAAAAACCAAGTTAGCCAAAGACCTTGGCCTGCAGCCACGACAAGTCGCTATTTGGTTCCAGAACCGTCGTGCTCGATGGAAGACCAAACAGCTCGAGAAGGATTACGAGATTCTGCATGAAAGCTATGAGAGTCTCAAGGCCAACTACGAAAACCTCCTCAAGGAGAAAGACAAGTTGAAATCTGAGGTGGCGCTCCTGAGCGAGAAGGTGCTTGCAAAAGAGAAAGAAGAGGGGCAAGTGAAGCAGGGTGAAAGTGGAACAAAGGGGATGCTGGAACAGGATCAGGAACCACCCCAAAGGCCTATACTCGATTCAGTTTCGGAGGGTGAAGGATCGAAAGTATCTTGTGTTGTTGGGGGTTGCAAACAGGAAGATATCAGTTCAGCAAGGAGTGACATTTTGGACTCCGATAGCCCGCATTACACGGATGGAGTTCACTCAGCGGTGCTAGAGCATGGTGATTCTTCTTATGTGTTTGAGCCTGATCAATCGGACATGTCACAAGATGAAGAAGACAACCTCAGCAAGAGTCTGTACCCTTCGTACCTCTTTCCAAAGCTCGAAGATGCGGATTACTCCGACCCCACGGAAAGTTCTTGTAATTTTGGATTCTCGGAGGAAGATCATGCCCTTTGGACCTGGGAGTACTAA 975 0.4923 MAAGRAFSDITTFLRNQTAPPNSQPLDSLFFSPSAAPFLGSRSMMSFEGEGGKGCKGSFFRAFDVDENGDECMDEYFHQPEKKRRLSANQVQFLEKSFEEENKLEPDRKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEILHESYESLKANYENLLKEKDKLKSEVALLSEKVLAKEKEEGQVKQGESGTKGMLEQDQEPPQRPILDSVSEGEGSKVSCVVGGCKQEDISSARSDILDSDSPHYTDGVHSAVLEHGDSSYVFEPDQSDMSQDEEDNLSKSLYPSYLFPKLEDADYSDPTESSCNFGFSEEDHALWTWEY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01056 324 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Lapu3g01056 324 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Lapu3g01056 324 FunFam Homeobox-leucine zipper protein HAT5 75 139 - -
Lapu3g01056 324 SUPERFAMILY Homeodomain-like 69 139 IPR009057 -
Lapu3g01056 324 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 224 IPR045224 GO:0003700
Lapu3g01056 324 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Lapu3g01056 324 SMART HOX_1 80 141 IPR001356 GO:0003677
Lapu3g01056 324 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Lapu3g01056 324 MobiDBLite consensus disorder prediction 182 216 - -
Lapu3g01056 324 CDD homeodomain 82 138 IPR001356 GO:0003677
Lapu3g01056 324 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Lapu3g01056 324 Gene3D - 76 144 - -
Lapu3g01056 324 Pfam Homeobox associated leucine zipper 137 178 IPR003106 GO:0006355|GO:0043565
Lapu3g01056 324 Coils Coil 136 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01056 Lapu-Chr3 11308416 11310914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01056 21 255 Homeobox Transcription Factor Family AT3G01470 42.149 1.09e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu3g01056 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01056 - - gmx:100799054 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01056 3 11308416 11310914 Lapu3g01056 3 11308416 11310914 ECH