Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01048 ATGGCAAATCCTGCTCCTGCGTGCTTCTCCACTCAAGCAAACGCGCTTCTTCGCAAGAACTTAACCTTCCAGAAACGGAACGTGAAAACCAACCTTCGGCTGATTCTGTTCCCGGTGGTGCTATGCTTGTTGATTTTCGCGCTCCAACTCATATTAGACACGCAATTCGATAAAAGCAGCTTTAAGTGCGGCTGCGTGTGTGCCGACAACAGAGCCGAAATCTCTCACTGCCCAGACTCAAAGAAGCGGTGTGGGGTCCAGTATTCTGATCCCTTACAAGCCGCCCTGTGCCCCGTTCCCAACCCCGTCGAATGGCCACCGCTCTTGCAAATTCCGGCTCCCCCGAATCGGGCCGTGCGAACCGATTTTCTTCCGTTTTTCGATTTGCCCTATGCATCGTGCAGGAGAACCGACTCGTGTCCTCTTTCTCTGCTCTTCACTGCAGAGAATCACTCCTTTGCGCAAGGCGTGACTGAGAAGATGTTTGGGAGTGCCCTGAGTATAAGTGAGTTTGGTAGTAATTTCTTTGCTGGTTTGGCTATGAATGTACTGGGATCTGAATCAAAACCTGGGAGGAACAATTTTATTGAACCTGCTTTCTCTTCGGATCTCCCTATTTACTATTTACAAACAAACTGCACAGGAACAGAGAACTCTGGACTCTCCTTTCCCTCGATCACAGGAGCAAACAATGAGATCAAATGTGCTCAGGCTCTAAATTTATGGCGTAATAGTTCTTCTGAGATCAACAGTGAGCTATACAAAGGTTATCAAAGAGGTAACACAGAGGGACAAGTCAATGAGATAGTTTCAGCTTTTGATTTTCTAAATTCAAATCGGAATAGATATAATGTCAGTATATGGTACAACTCAACCTACAATCAAAACGCAGGATTTAATGCTAATTTGTTGTTGCGGATTCCTCGCTCTGTAAATCTGATTTCCAATTCCTACCTGCAGTTTCTACTTGGGCCTGGAACCAAAATATTATTTGAGTTTGTAAAGGAAATGCCAAAACCCGAGACCATCTTTAAGCTTGACATATCTTCTATTGTGGGCTCTCTATTCTTTACATGGGTCATCTTGCAACTTTTTCCTGTTGTTTTGACATCACTGGTATATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATACTGGATGATTTCATATGGTTATTTTCTTGTCACATCAGTAATCTACATGTTGTGCTTTGTGATATTTGGCTCACTCTTAGGATTAAAAATCTTCACAACCAATGACTACAACATTCAATTTGTATTTTATTTTATCTATATAAACTTACAGATTGCACTGGCATTTTTGATGGCTTCCATGTTTTCAAATGTCAAGACTGCTACAGTAACTGCATATATAGGTGTCTTTGGGACCGGGTTATTAGGTGGCTTTTTTTTCCAATTCTTTGTTCAGAATACATCATTTCCAAGAGGGTGGATAATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATACCGTGGGTTATATGAGTTAGCACAATTTGCCTTTGAGGGGGATACTTCTGGGACTGGTGGTATGAAGTGGCATAATCTGAGTGAAAGCACTAATGGCATGAAAGAGGTTTTAATTATCATGTTTGCTGAGTGGGTAGTGATGCTTTTTGCTGCCTTCTACATTGACCAAGTTTTGTCATCAGGAAGTAGAAAAAATCCTCTTTTCTTCTTGAAAAGATTTCAGAGAAAGTCTCCTTTCGAAAAGCTTGATACCCTATTGCAGGTGTCAAAAGTATTCTCTGAAATGGGAAAACCTGATGTCATCCAAGAGAAGGAGAAGGTGGAGGAGCTGCTACTTGAACCAACTATTAATCATGCAATTCTATGTGACGATCTAAAAAAAGTCTATCCAGGGAGGGATGGAAATCCAGAGAAATTTGCAGTAAGAGGGTTGTTCCTTTCTGTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCTAATGGAGCTGGGAAGACCTCTTTTATTAATATGATGATTGGTCTTACAAAACCAACCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGATGGAATATATACTACCATGGGTGTATGCCCACAACATGACTTGTTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGTAGACTTAAGAATCTTAGAGGCTCAGTCTTAACACAAGCAGTAGAGGACTCTTTGAAGGGTTTAAACCTTTTTCACGAAGGAGTTGCTGATAAACAAGTTGGAAAGTACAGCGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCCAAAGTTGTTTACATGGATGAACCAAGTTCCGGGTTAGACCCTGCCTCAAGAAAAAGCTTATGGAATGTTGTCAAGCATGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTATGTGATCGATTGGGCATATTTGTAAATGGTAGCTTGCAGTGTGTAGGAAATGCAAAGGAGCTTAAAGCAAGATATGGAGGAACTTACGTGTTCACAGTGACAACATCTTCGGAGCATGAAACAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCCAATAAGATATACCATCTCTCTGGTACTCAGAAGTTTGAGCTGCCGAAAGAGGATGTTAGAATATCAGACGTGTTCCAAGCTGTTGATGCTGCAAAGAGAATGTTCACTGTTTCTGCCTGGGGTTTAGTTGACACCACATTGGAAGATGTATTCATTAAGGTAGCACGTGAGGCTCAGTCATTTGCTACCTTGTCATAA 2847 0.4201 MANPAPACFSTQANALLRKNLTFQKRNVKTNLRLILFPVVLCLLIFALQLILDTQFDKSSFKCGCVCADNRAEISHCPDSKKRCGVQYSDPLQAALCPVPNPVEWPPLLQIPAPPNRAVRTDFLPFFDLPYASCRRTDSCPLSLLFTAENHSFAQGVTEKMFGSALSISEFGSNFFAGLAMNVLGSESKPGRNNFIEPAFSSDLPIYYLQTNCTGTENSGLSFPSITGANNEIKCAQALNLWRNSSSEINSELYKGYQRGNTEGQVNEIVSAFDFLNSNRNRYNVSIWYNSTYNQNAGFNANLLLRIPRSVNLISNSYLQFLLGPGTKILFEFVKEMPKPETIFKLDISSIVGSLFFTWVILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLVTSVIYMLCFVIFGSLLGLKIFTTNDYNIQFVFYFIYINLQIALAFLMASMFSNVKTATVTAYIGVFGTGLLGGFFFQFFVQNTSFPRGWIIVMELYPGFALYRGLYELAQFAFEGDTSGTGGMKWHNLSESTNGMKEVLIIMFAEWVVMLFAAFYIDQVLSSGSRKNPLFFLKRFQRKSPFEKLDTLLQVSKVFSEMGKPDVIQEKEKVEELLLEPTINHAILCDDLKKVYPGRDGNPEKFAVRGLFLSVPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTQMDGIYTTMGVCPQHDLLWESLTGREHLLFYGRLKNLRGSVLTQAVEDSLKGLNLFHEGVADKQVGKYSGGMKRRLSVAISLIGDPKVVYMDEPSSGLDPASRKSLWNVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGGTYVFTVTTSSEHETDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRISDVFQAVDAAKRMFTVSAWGLVDTTLEDVFIKVAREAQSFATLS* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01048 948 Gene3D - 618 893 IPR027417 -
Lapu3g01048 948 FunFam ABC transporter A family member 7 615 891 - -
Lapu3g01048 948 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 601 942 IPR026082 GO:0016020|GO:0055085|GO:0140359
Lapu3g01048 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 863 IPR027417 -
Lapu3g01048 948 ProSitePatterns ABC transporters family signature. 765 779 IPR017871 GO:0005524|GO:0016887
Lapu3g01048 948 Pfam ABC-2 family transporter protein 280 559 IPR013525 GO:0016020|GO:0140359
Lapu3g01048 948 SMART AAA_5 656 840 IPR003593 GO:0016887
Lapu3g01048 948 Pfam ABC transporter 651 792 IPR003439 GO:0005524
Lapu3g01048 948 CDD ABC_subfamily_A 630 851 - -
Lapu3g01048 948 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 863 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01048 Lapu-Chr3 11212927 11232158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01048 630 874 Calmodulin-binding Proteins AT2G36910 25.000 8.13e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01048 - - vra:106769009 1637.08