LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g01044	ATGGAGCTTGCTTCAGAGAGATCAGGTGACGGAGGAAGTGGACTCAAGGAAGAAAAGAGAAGTGATGAGTATACTATTGATGATGATGGTGATGATGGTACTCGTAAACAACAGGTTATTGTCGAGGAACCAGCCGTAGCTAATACGGAAAGATCCATACAAGAGGCTGGACCTAGCACATCCGCAGACAAAAAGGAAGAGGTTGATGATCAGCTAGAGAGTACAAAAGCTGAAATGGGTGTGGTGAGAGAAGAAAATCAACGGTTAAAGAGGTCTTTGAACAAAATAATGAATGAATATAGGACACTAGAAATGCAATTTCAAGACATACTTAAGCAAGGGACAAAAAGGAAAGTTGATAAAGAAAATGGTAATCAAGAAGACACATTAGAGGAATCGGATCTAGTTTCCCTCAGCCTAGGAAGAGTTCCAAGCAATCAAAGAAACGATGAGAAAACCAAAGTTCATAAACCATTGAAGGATGATGAAGGGTTTAACCAAGACTTGACTCTTGGACTAGAGTGCAAATCAAAGTCAGGAAGCACAACTGAAGCTTTGCCTAATCCAAGCCCAGAAAACAGCTCTGAAGCTCCAAAGGAAGAAGCTGGGGAAACTTGGCCACCCAGTAAGGAGACACAGAAGACAATTAGGGACACAGAAGATGAAGTTGCTCAGCAAAACCCTATGAAGAAACCACGAGTTTGCGTTAGAGCAAGATGTGACACTCCAACAATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAGATCGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACCATTGCACCATCATGCCCAGTGAGAAAACAGGTGCAAAGATGTGTTGATGACATGTCAATTCTAATCACCACGTATGAAGGGACCCACAACCACACTCTTCCACCTTCAGCTACTGCCATGGCGTCCACAACTTCCGCAGCAGCATCCATGCTTCTTTCGGGTTCCTCGACCTCTCACTCTGCTTCAACACCTTCAACAACAGCCACTTCTGCTACCAATCTCCACGGGCTCAACTTCTATCTATCAGATGGTTCAAAACCAAGGCAATTATACCTGTCCAACCCTGCACTGTCATCTTCACCTTCACATCCAACCATCACTCTCGACCTCACTTCACACCCAGCTTCTTCCTCCTCATCACCCTTCGTTAGATTCACTTCAAACTACAACCAACTCAGATACCCCTCTTCCTCAAGCCTAAGCTTCAGTAGTTCGTCAGAAATCAATGCATTGTCTTGGAGCAACGGCTTCCTTAACAATAATAACACTACTCAACAACCATATAATAGCAGGAACATACTTGGGAATGTAAACTTTGGGAGACAACAAGTGGAAAATATGTACCAATCTTACATGCAAAAGAACAACAGCAACACTCCAACTGTTCCTCAAGGTGGCGTGCCAGCTGATACTATATCCGCAGCAACAAAAGTGATCACAGCAGACCCCACTTTTCAATCAGCTCTGGCAGCGGCGCTTACTTCGTTTATTGGTGGCGGTGTTCGAGGAAATCAAGGTGGTAATAGTGTTGGAGAAAATCCAAGTTTGGTTCAGAAAATGAAGTGGGGTGAGGTGTTTCCAGCGTCTAATAATTCCTCTTCTACCTTGCCTTGTTCAACTTCGAAAGTCAATGGTTGTGCATCGAGCTTCTTGAACAAAACGCCCGCGAATAATACACAGACGAAAAGTTTGATGTTTCTGCCGCCGTCGTCCTTGCCGTTTTCCACCCCCAAAAGTGCATCTGCATCTGCATCTCCTACTGATAATAGCGACACCACCAATTAA	1821	0.4426	MELASERSGDGGSGLKEEKRSDEYTIDDDGDDGTRKQQVIVEEPAVANTERSIQEAGPSTSADKKEEVDDQLESTKAEMGVVREENQRLKRSLNKIMNEYRTLEMQFQDILKQGTKRKVDKENGNQEDTLEESDLVSLSLGRVPSNQRNDEKTKVHKPLKDDEGFNQDLTLGLECKSKSGSTTEALPNPSPENSSEAPKEEAGETWPPSKETQKTIRDTEDEVAQQNPMKKPRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSHSASTPSTTATSATNLHGLNFYLSDGSKPRQLYLSNPALSSSPSHPTITLDLTSHPASSSSSPFVRFTSNYNQLRYPSSSSLSFSSSSEINALSWSNGFLNNNNTTQQPYNSRNILGNVNFGRQQVENMYQSYMQKNNSNTPTVPQGGVPADTISAATKVITADPTFQSALAAALTSFIGGGVRGNQGGNSVGENPSLVQKMKWGEVFPASNNSSSTLPCSTSKVNGCASSFLNKTPANNTQTKSLMFLPPSSLPFSTPKSASASASPTDNSDTTN*	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g01044	606	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	56	520	IPR044810	GO:0003700
	Lapu3g01044	606	SMART	WRKY_cls	245	305	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lapu3g01044	606	MobiDBLite	consensus disorder prediction	114	128	-	-
	Lapu3g01044	606	MobiDBLite	consensus disorder prediction	147	164	-	-
	Lapu3g01044	606	MobiDBLite	consensus disorder prediction	1	84	-	-
	Lapu3g01044	606	MobiDBLite	consensus disorder prediction	197	215	-	-
	Lapu3g01044	606	Pfam	WRKY DNA -binding domain	246	303	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lapu3g01044	606	SUPERFAMILY	WRKY DNA-binding domain	238	306	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lapu3g01044	606	ProSiteProfiles	WRKY domain profile.	240	306	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lapu3g01044	606	Coils	Coil	65	113	-	-
	Lapu3g01044	606	Gene3D	WRKY domain	230	307	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lapu3g01044	606	MobiDBLite	consensus disorder prediction	172	195	-	-
	Lapu3g01044	606	MobiDBLite	consensus disorder prediction	60	84	-	-
	Lapu3g01044	606	MobiDBLite	consensus disorder prediction	114	215	-	-
	Lapu3g01044	606	MobiDBLite	consensus disorder prediction	573	606	-	-
	Lapu3g01044	606	FunFam	probable WRKY transcription factor 31	230	307	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g01044	Lapu-Chr3	11172000	11176528	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g01044	68	514	WRKY Transcription Factor Family	AT1G18860	41.765	1.53e-83	270

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lapu3g01044		WRKY	2e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g01044	-		-	pvu:PHAVU_003G192000g	984.941