Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01036 ATGGGATCAGAGAGTGTGGCTCCGGCTGTTGAGACATCAAAAAGCAGGTCTTCTTCTGGTAAAATGAACCAAGGGAAAGTCCCCAGGAAAATTCACAAGGCTGAAAGGGAGAAAATGAAACGTGACCATTTGAATGAACTCTTCCTTGATCTTGCCAATGCACTTGATGTAAATGAGAACAATGGAAAGGCTTCTATATTATGTGAAGCTGCTAGGTTGCTAAAAGACTTGCTCTCTCAGATCGAGTCCCTCAAGAAAGAGAACGTCACACTGGTGTCTGAATCGAATTATGTGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGCCTAGAAACTCAAATTGAGAGACTTCAAGGTGAGATACGGGCAAGAGTGGCTCAATCTAAACCTGACCTGAATGTACCTCCTCATTTGGAACTTGAGGCACTGGAGCGGTCAAATTTTCCAGGACAGAGTCTCCAATTGCATACCATGGAACCTAACTTGCAACAAGGATCTGCAGTTTTGCTTGTCCCTTTTCCTCCTGATCTTGAAGCTTCTTTTCCAGCTCCTAATGTTACCGAAGTCGCGCCAAATTCTACGTCTGTTGTCAGTAAACCGCATGCCAGGTATCCCACAGCAGCAGATTCATGGCCATCACAGCTGCTTGGATAA 660 0.447 MGSESVAPAVETSKSRSSSGKMNQGKVPRKIHKAEREKMKRDHLNELFLDLANALDVNENNGKASILCEAARLLKDLLSQIESLKKENVTLVSESNYVTMEKNELKEENCSLETQIERLQGEIRARVAQSKPDLNVPPHLELEALERSNFPGQSLQLHTMEPNLQQGSAVLLVPFPPDLEASFPAPNVTEVAPNSTSVVSKPHARYPTAADSWPSQLLG* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01036 219 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 29 104 IPR036638 GO:0046983
Lapu3g01036 219 Gene3D - 28 103 IPR036638 GO:0046983
Lapu3g01036 219 PANTHER TRANSCRIPTION FACTOR BHLH47 6 218 - -
Lapu3g01036 219 MobiDBLite consensus disorder prediction 1 38 - -
Lapu3g01036 219 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 77 IPR011598 GO:0046983
Lapu3g01036 219 Coils Coil 74 94 - -
Lapu3g01036 219 Coils Coil 102 122 - -
Lapu3g01036 219 MobiDBLite consensus disorder prediction 192 219 - -
Lapu3g01036 219 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01036 Lapu-Chr3 11097206 11099971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01036 21 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 48.624 1.72e-57 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01036 - - gmx:100809240 378.252