Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01035 ATGGAGGGTGGCGACGATCTCCACCACCATCACCATCACCACCACCACCGTCAGAACTTCCCATTCCAGCTCCTGGAGAAGAAAGAAGACCAAGAAGCCGCGTCATGCTCCACTTCCTCCCCCTACCCTTCCCTAGCAATCTCCGCGGAACCCAGCACGTCCAATTCCACTCCATCCAACCAGCTCGCGGCGGCGTCCGAGCCCACAAACAGCAAAAAGCCGCCGCCCAAACGCACGTCCACTAAGGACCGGCACACGAAAGTGGACGGTCGTGGCCGCCGCATCCGAATGCCCGCCCTCTGCGCCGCCCGCGTCTTCCAACTCACGCGCGAACTCGGTCACAAGTCCGATGGTGAAACCATCGAGTGGCTCCTTCAGCAGGCCGAGCCCGCCGTCATCGCCGCCACTGGAACCGGCACTATCCCCGCTAACTTCACCTCTCTCAACATCTCCCTCCGCAGCTCTGGCTCCTCCATGTCTGTACCCTCCCAGCTCCGATCCTCCTACTTCAACCCCAACTTCTCCCTCCAACAACGCCGCACCTTGTTCCCCGGCATCGCCTTATCCTCCGACACCAACAACCCCAACACCTCCACACTCCTCAATTTCCAATCCAACAACCTCAACACCTCCATGCTACAGGCCAAGCCCGAAGCCCCCTCCTCCACCTTGGATTTGTCCGAAACAAGCGCCGAGGAATCAACCCTAGGCCGAAAAAGAAGACCGACGGAACAAGACCTATCCTCCTCCTCGCAGCACCAATTGGGAAGTTATCTCCTACAGTCGAGTGCAGGCACGATTCCTGCGAGCCACGCCGCCAACATATGGATGGTGGCCAATTCAAACTCCAACCAAGTCATGAGTGGCGATCCCATATGGACCTTCCCTCCGGTTAACAACAGTGCCTTGTATCGAGGCACCATGTCTAGTGGGTTGCATTTCATGAACTTTCCCACGCCCATGGCACTGTTGCCCAGTCAGCAACTAGGGTCTTCTGGGATTGGCGCTGTTGGGGGAGGCAGTAGTAATAATAATAGTAATAATAACAACAGTAATAATAATATGAATGAAGGGCATTTGAGTATGCTCGCGGGGCTTAGTCCTTATCGTCCTGTTATCGGTGTTTCTGAATCTCAGGCGAGCGGCTCGCAATCGCATCGTGGAGGTGCCGCCGATGATCGCCATGATACCACCAGTCACCACTCCTAG 1209 0.5641 MEGGDDLHHHHHHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISAEPSTSNSTPSNQLAAASEPTNSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIALSSDTNNPNTSTLLNFQSNNLNTSMLQAKPEAPSSTLDLSETSAEESTLGRKRRPTEQDLSSSSQHQLGSYLLQSSAGTIPASHAANIWMVANSNSNQVMSGDPIWTFPPVNNSALYRGTMSSGLHFMNFPTPMALLPSQQLGSSGIGAVGGGSSNNNSNNNNSNNNMNEGHLSMLAGLSPYRPVIGVSESQASGSQSHRGGAADDRHDTTSHHS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01035 402 MobiDBLite consensus disorder prediction 374 402 - -
Lapu3g01035 402 MobiDBLite consensus disorder prediction 19 33 - -
Lapu3g01035 402 MobiDBLite consensus disorder prediction 232 246 - -
Lapu3g01035 402 MobiDBLite consensus disorder prediction 215 253 - -
Lapu3g01035 402 MobiDBLite consensus disorder prediction 333 360 - -
Lapu3g01035 402 ProSiteProfiles TCP domain profile. 81 135 IPR017887 -
Lapu3g01035 402 MobiDBLite consensus disorder prediction 388 402 - -
Lapu3g01035 402 Pfam TCP family transcription factor 79 247 IPR017887 -
Lapu3g01035 402 MobiDBLite consensus disorder prediction 215 231 - -
Lapu3g01035 402 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 351 IPR005333 GO:0003700
Lapu3g01035 402 MobiDBLite consensus disorder prediction 1 94 - -
Lapu3g01035 402 MobiDBLite consensus disorder prediction 34 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01035 Lapu-Chr3 11081528 11084369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01035 71 396 TCP Transcription Factor Family AT3G47620 44.337 8.59e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lapu3g01035 TCP 3.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01035 - - gmx:100790785 598.586