Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01030 ATGAACATGGGGAGGCCACCTTGCTGTGACAAAATTGGTATCAAGAAAGGGCCTTGGACTCCAGAGGAGGATATCATGCTGGTTTCTTACATTCAAGAACATGGACCAGGAAATTGGAGATCAGTTCCCACCAACACAGGTTTGATGAGATGCAGCAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCTGGTATCAAACGAGGTAATTTCACGGAACATGAGGAGAAGATGATAATCCACCTACAAGCCCTTTTGGGCAACAGATGGGCTGCTATAGCTTCATACCTTCCAGAAAGGACAGACAACGACATAAAAAATTATTGGAATACCCATTTGAAGAAGAAGCTGAAACCAAGTGATCAAAGTGAGAATGGAGAGGGTGTGGAGCAAGAGGGACATTCTTCTTCTTCGCATCCAAAGGGTCAGTGGGAGAGAAGATTACAAACAGACATCCAAACGGCCAAGCAAGCCCTGTGTGATGCTTTGTCCCTTCACACGCCACCAGCAGCAACATATGCTGTGCCTGATACCAAGCCTTCTTCAAGTTCTCATCAACCCTACAACCATGCCTCGTTTTCATATGCATCAAGCTATGAAAACATTTCCCGGTTGATGGAAAACTGGATGAAATCTCCAAACTTAAACGAAACAAACTCACTAGGGGATTATTCCTTCAATAACATGGTCAATAATACACCAAGATCCAGTTCTAGTGAGGGAGCACATAGCACCACTAATACCACGTATGCACAAGATCACGTTTTTGACTTGTTCACCCTCAACTCCTCCAAACACTATGGTTCTCCATCTCACTCTCAAGTGCCTCTTACGCTGATAGAGAATTGGCTTTTTGAGGACGGGGCTTCTCAGTCTCATGAAGATTTGATGAGCATGTCGCTGGAAGAAAGTACTTCAGGTTTGTTTTAG 933 0.4427 MNMGRPPCCDKIGIKKGPWTPEEDIMLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKPSDQSENGEGVEQEGHSSSSHPKGQWERRLQTDIQTAKQALCDALSLHTPPAATYAVPDTKPSSSSHQPYNHASFSYASSYENISRLMENWMKSPNLNETNSLGDYSFNNMVNNTPRSSSSEGAHSTTNTTYAQDHVFDLFTLNSSKHYGSPSHSQVPLTLIENWLFEDGASQSHEDLMSMSLEESTSGLF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01030 310 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Lapu3g01030 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Lapu3g01030 310 FunFam MYB-related transcription factor 15 68 - -
Lapu3g01030 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
Lapu3g01030 310 Gene3D - 70 158 - -
Lapu3g01030 310 Gene3D - 15 68 - -
Lapu3g01030 310 CDD SANT 71 114 IPR001005 -
Lapu3g01030 310 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Lapu3g01030 310 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lapu3g01030 310 CDD SANT 18 63 IPR001005 -
Lapu3g01030 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 242 - -
Lapu3g01030 310 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lapu3g01030 310 MobiDBLite consensus disorder prediction 117 147 - -
Lapu3g01030 310 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lapu3g01030 310 SMART sant 68 116 IPR001005 -
Lapu3g01030 310 SMART sant 15 65 IPR001005 -
Lapu3g01030 310 FunFam Transcription factor MYB30 70 128 - -
Lapu3g01030 310 MobiDBLite consensus disorder prediction 227 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01030 Lapu-Chr3 11027396 11028754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01030 3 310 MYB Transcription Factor Family AT5G62470 50.134 1.27e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g01030 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01030 K09422 - gmx:100812460 513.072