Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01029 ATGAAAAAGAGGCAGGTGGTGGTGAAGAGAGATTACGCCACTTCATCTTCTGCGGGGGGGAATATTCGATACGGGGAGTGCCAGAAGAATCATGCAGCGAACACGGGAGGTTACGCAGTGGATGGTTGCAGGGAATTCATGGCTAGCGCCGGTGAGGGACCGAGTGCGGCGCTTACGTGTGCGGCTTGCGGCTGCCACAGGAACTTTCACAAGAAGGAAGTACTGCACAGCGTAAACTGA 240 0.55 MKKRQVVVKRDYATSSSAGGNIRYGECQKNHAANTGGYAVDGCREFMASAGEGPSAALTCAACGCHRNFHKKEVLHSVN* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01029 79 Pfam ZF-HD protein dimerisation region 22 74 IPR006456 -
Lapu3g01029 79 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 23 74 IPR006456 -
Lapu3g01029 79 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 74 - -
Lapu3g01029 79 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 24 73 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01029 Lapu-Chr3 11010894 11011133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01029 1 74 Zinc finger-homeobox gene family AT1G18835 69.737 1.48e-30 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu3g01029 ZF-HD_dimer 4.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01029 - - gmx:100797273 156.762