Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01018 ATGGGAAGGGTTAAATTGAAGATAAAGAAATTAGAGAGCATAAGCAATCGACACGTGACTTATTCAAAGCGTAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATATTATGCGATATAGATATTCTCCTTCTCATGTTTTCTCCTACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGTAATATTGAGGAGGTTGTTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGCCTTGAAGCGCTAAAGAAAACCTTCAAGAAATTGGATCATGATGTAAAAATACAGGATTTCTTAGGTTCAAGCAGCCAAACCATGGAGGAATTATCTCATCAAGTGAGGGTTTTACAAGCTCAGGTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAACAATTTAGAGCATCTTAGGCAAATGGAAGACTCATTACGAGAATCAATCAATCGAGTGGGCCTGCAGAAGGATAATTTAGGAAAGCACCAACTCATTTCACTTGAATGTGCTAACCAGTTACAGGAAGGGATGGCATTACCCTTGATGATGGCAAGTCTACAAGATTCTCAACCCTTGTCTTGGCTTTTGAATAATGATAATCATCAACTGTTGTTACCAAATGAACCAAAATTTCTACCATTTAGTGATAATACCAATAGAGACGCTGAGTGTTCCACTGACATTTCGCTTCCGAGCTATTCAAGTTATATTGGGAGCAACAAACTTGAAGTTGGTAGCTCTCCCCAAGTGACTACTTTGGGTCAAGGAGGTGGTGCAATGAATGAGTTAAATGGAACTACATACTTAAACGTACAACATTGTGACCAATTTGCATTCCCTCCTCCACAAGATATTGAGGAAGCGAAACATTTACCAACATTGAACAATAAATCAAACACAGTGGATTACCAAGTTAACAACTTTGATCTTTCCGGTTCACTATTTGAAAATGGACATCAATTTTGGAATTCTGCTTCGGGGTCTTGTAGCATTGCCATGTATAATGAGAACGGCTATCACAGGTAA 1062 0.3832 MGRVKLKIKKLESISNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNIEEVVAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMEELSHQVRVLQAQVTEVHQRLSYWNNLEKINNLEHLRQMEDSLRESINRVGLQKDNLGKHQLISLECANQLQEGMALPLMMASLQDSQPLSWLLNNDNHQLLLPNEPKFLPFSDNTNRDAECSTDISLPSYSSYIGSNKLEVGSSPQVTTLGQGGGAMNELNGTTYLNVQHCDQFAFPPPQDIEEAKHLPTLNNKSNTVDYQVNNFDLSGSLFENGHQFWNSASGSCSIAMYNENGYHR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01018 353 Coils Coil 77 97 - -
Lapu3g01018 353 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Lapu3g01018 353 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Lapu3g01018 353 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu3g01018 353 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu3g01018 353 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu3g01018 353 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu3g01018 353 Coils Coil 114 134 - -
Lapu3g01018 353 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Lapu3g01018 353 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Lapu3g01018 353 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lapu3g01018 353 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lapu3g01018 353 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01018 Lapu-Chr3 10919939 10925126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01018 1 276 Type I MADS-box Gene Family AT2G03060 50.175 4.96e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lapu3g01018 SRF-TF 2.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01018 - - pvu:PHAVU_003G189100g 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01018 3 10919939 10925126 Lapu3g01018 3 10919939 10925126 ECH