Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01017 ATGGAAAAAGTTTCCCTGCTTTCTAAGGAAGACGATCACATGGATTTGCCTCCCGGATTTCGGTTCCACCCCACTGATGAAGAGCTTATAACCCATTATCTCTACAAGAAGGTCATTGATACCAAGTTCTGCGCTAGAGCCATTGGAGAAGTCGACCTCAACAAGTCTGAGCCTTGGGATTTGCCATGGAAAGCGAAAATGGGAGAGAAGGAGTGGTACTTTTTCTGTGTTAGAGACCGAAAATACCCCACTGGGTTGAGAACCAACCGGGCCACTGAAGCCGGTTACTGGAAAGCCACGGGGAAAGACAAAGAGATTTTCAGAGGAAAATCTTTGGTCGGAATGAAAAAGACTCTTGTTTTCTACCGAGGTCGAGCACCCAAAGGAGAGAAAAGCAACTGGGTCATGCACGAGTACAGACTTGAGGGGAAATTCTCTGTTCACAACCTCCCCAAAACTGCAAAGAACGAGTGGGTGATCTGCAGGGTGTTTCAGAAAAGTTCAGCAGGGAAGAAAACTCATATTTCGGGGATAATGAGGTTGGACTCTTTTGCCAACGAATTGGGTTCTTCTGCTCTCCCACCCCTTTCGGATTCTTCACCTTCTATTGGCAACACTAAACCCCTCAATGAATCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCAAGAAGGGGTCTTTGATTCCTTCAACAACTCTATCTATGGGGTTTCTTCAAATCCTTTGGACTTTCTTCCAAGAATGCCACCTTCTGCCTCGTTCTACTCCACTCAAGGTGTTCAAGCTGTGCCTAATTTGACATTTCCCGGTTCTGTTTACAGTCTGCAGGACCACACCATTCTGAAAGCCATGTGTGAAAACAATGGTAATGGTTACAAGTCAGAGAGGGACATGATCAGTGTCTCACAGGAAACGGGTCTTACTACCGATATCAACCCTGAAACCTCTTCAAATTTTGATATGGGTAGGAGGCACTTTGACAATCACAATCATCCATCTGTTTCTGTTGCTCCATTGGATCTTGATGGTTTGTGGAATTACTAA 1059 0.4523 MEKVSLLSKEDDHMDLPPGFRFHPTDEELITHYLYKKVIDTKFCARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSFANELGSSALPPLSDSSPSIGNTKPLNESAYVPCFSNPIDVQRNQEGVFDSFNNSIYGVSSNPLDFLPRMPPSASFYSTQGVQAVPNLTFPGSVYSLQDHTILKAMCENNGNGYKSERDMISVSQETGLTTDINPETSSNFDMGRRHFDNHNHPSVSVAPLDLDGLWNY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01017 352 FunFam NAC domain-containing protein 100-like 25 170 - -
Lapu3g01017 352 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Lapu3g01017 352 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Lapu3g01017 352 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Lapu3g01017 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 243 - -
Lapu3g01017 352 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01017 Lapu-Chr3 10890266 10892216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01017 14 352 NAC Transcription Factor Family AT5G07680 59.882 5.41e-139 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu3g01017 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01017 - - gmx:100798002 672.93