Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01014 ATGGAAACTGAAATAATCCAGGGACCTTGGAGATTTCGCTCTCTGTCCAAATTCATATTGTGCACCATTTCTGGGGCCCTCACCGTGTGTTTTGCCATTGCTGGTGCCCTGACAGGAGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACAAAGAGTGGTCTTCTCCGGGGAGTTTCATTGGGTGCCATTGCCGGGTCTATACTCTCAGTGGAGGTGTTGGAAGCTTCCCGTGCATACTGGTGTATGGAGCAAACTGGCTCACGGGGAGCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGAGGGAGGCTTGTTGAGGAATCCCTTACACCTGCCATATTAACTGCCTACAATTTGCAGTTTGAGCAGGTTGGCATTGCTAATGCAGGCTATGATGAGATTCATGATGTTCATGGCTTAGTGGCACCCAGAGGATTGTCAGGAGATTCATTGAAGAGGTTACCGCACCATATGATCTCAAAGGATATGAAGGCAGAAAATACTTGTTGTACAATATGTTTGCAGGATGTTGAAGTAGGCGAAATTGCAAGAAGCTTACCTCGCTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCCTGTCCTGTCTGCAGACAGAATGTGTAA 651 0.4624 METEIIQGPWRFRSLSKFILCTISGALTVCFAIAGALTGAIAGALAAKATKSGLLRGVSLGAIAGSILSVEVLEASRAYWCMEQTGSRGASSMADFIEELVRGRLVEESLTPAILTAYNLQFEQVGIANAGYDEIHDVHGLVAPRGLSGDSLKRLPHHMISKDMKAENTCCTICLQDVEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQNV* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01014 216 Pfam Ring finger domain 171 213 IPR001841 -
Lapu3g01014 216 SMART ring_2 171 212 IPR001841 -
Lapu3g01014 216 CDD RING-H2_NIPL1-like 170 213 - -
Lapu3g01014 216 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Lapu3g01014 216 SUPERFAMILY RING/U-box 152 216 - -
Lapu3g01014 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 216 IPR013083 -
Lapu3g01014 216 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 15 215 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01014 Lapu-Chr3 10866891 10870090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01014 14 216 C3H Transcription Factor Family AT1G74410 56.373 5.69e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01014 - - gmx:100800105 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01014 3 10866891 10870090 Lapu3g01014 3 10866891 10870090 ECH