Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01011 ATGGATGCTGAAACTGAGACTGAGGAACTTATTAATTTGAACAATAAAGCAAGTGACTGTGGTGGGAATAATAGTAAGAGTGGCGATGGCTTTATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGACAATGATTCCAAGAGTTCTGAAGAGGTTTTTACTCTTCTTTTGAGGTGTTCTTACCAGGTTACTTCAGTAAGGTCAGCTAGGCAAGTAATTGATGCACTGAATGCGGAGGGGCAATATATAGACATGATACTAGTTGAAGTTGACCTTCCTGTAAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTATGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCATTGTTGTAAAGTGCTTGAGGCTTGGAGCAGCAGATTACCTAGTAAAGCCTTTACGCACAAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGACTTGTGGAGAACAGCATCTTGAATTATGAGTTTGAACTGGTAGCATCAGATCCGAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAGATCCAAAAGAAGCACTAATCCAGAGACAGAAGTATCAATCCAACAAGAACAAGAGATTAGTATTGCCGCGGCCGCCACTGTTGTGGTGGAGCTTCCCAGAGCTCTTGTATCAGAATATCAGCCTGATGTGCCTGGAAGAAGTGATCGCCGAACAGGACATTTTTCATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCGTCAGCCTTTTTCACTTATGTCAAAGCAACAGCGCTGAAGAGTAACATTGAAGAGAGTGCTCATGCTGACAATACTACTACAGAAGTTAGGGTGGAACATGTGAATCTAGCATGTGGTGAACAGGAGGGTAATGACCTTAAAACACATGAAAATGGAGAAATGTTTGAAAATCATTCACAAGATGACTTACCCAGCAGCAACAGTATCCCTGATTCTTTTTCTATTGAAAGATCTTCTACTCCACCTGCATCTATGGAAGTTTCTCAGCAAAAGCATTACAGGGAAGAACAGTCTCAGGGAGTAGGGCATCCAAGAAATGGAAATCACGGTTCCGATCCTGCTCAACATGCTTATCCATATTATATTTCAGGTGTTGTTAATCATGTTATGATGCCATCATCGGCACACATGTATCAAAAGAATATCCAGGACCTGCAAAGTCATTCTGGTTCTTCTGTGATTGCACAGTACAATCATCTTCCTCAGTGTCCTCCTCATGCAAGTGGGATGACATCCTTCCCATATTATCCAATGAGCATTTGCTTACAACCTGGTCAGATTTCTACAACTCATTCTTGGCCATCATTAGGAAGTTCAAGTTCGTGTGAGGTAAAATTAAGTAAGGTTGATAGGAGAGAAGCAGCATTGATGAAGTTTAGACAGAAAAGGAAAGAACGCTGTTTTGATAAAAAAATTAGGTATGTCAACAGAAAACGGCTGGCAGAAAGGCGGCCTCGTGTGAGGGGACAGTTTGTCAGAAAGTTGAAAGATTTTAATGTGGATCTTAATGGACAACCTGCTTCCACTGATTATGAGGAAGAAGATGATGAAGAGGAGATGTAG 1644 0.413 MDAETETEELINLNNKASDCGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLRCSYQVTSVRSARQVIDALNAEGQYIDMILVEVDLPVKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENSILNYEFELVASDPSDANTNSTTLFSDDTDDRSKRSTNPETEVSIQQEQEISIAAAATVVVELPRALVSEYQPDVPGRSDRRTGHFSSGPKKSELKIGESSAFFTYVKATALKSNIEESAHADNTTTEVRVEHVNLACGEQEGNDLKTHENGEMFENHSQDDLPSSNSIPDSFSIERSSTPPASMEVSQQKHYREEQSQGVGHPRNGNHGSDPAQHAYPYYISGVVNHVMMPSSAHMYQKNIQDLQSHSGSSVIAQYNHLPQCPPHASGMTSFPYYPMSICLQPGQISTTHSWPSLGSSSSCEVKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLKDFNVDLNGQPASTDYEEEDDEEEM* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01011 547 Gene3D - 37 239 - -
Lapu3g01011 547 MobiDBLite consensus disorder prediction 528 547 - -
Lapu3g01011 547 MobiDBLite consensus disorder prediction 322 382 - -
Lapu3g01011 547 SMART REC_2 37 152 IPR001789 GO:0000160
Lapu3g01011 547 MobiDBLite consensus disorder prediction 242 256 - -
Lapu3g01011 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR 37 244 IPR045279 GO:0009736
Lapu3g01011 547 MobiDBLite consensus disorder prediction 325 354 - -
Lapu3g01011 547 MobiDBLite consensus disorder prediction 185 212 - -
Lapu3g01011 547 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Lapu3g01011 547 Pfam CCT motif 479 521 IPR010402 GO:0005515
Lapu3g01011 547 ProSiteProfiles CCT domain profile. 479 521 IPR010402 GO:0005515
Lapu3g01011 547 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Lapu3g01011 547 MobiDBLite consensus disorder prediction 239 260 - -
Lapu3g01011 547 SUPERFAMILY CheY-like 35 163 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01011 Lapu-Chr3 10840430 10846064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01011 26 540 Response Regulator Gene Family AT5G61380 48.936 1.44e-176 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lapu3g01011 Response_reg 1.7e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01011 K12127 - gmx:100786522 940.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01011 3 10840430 10846064 Lapu3g01011 3 10840430 10846064 ECH