Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01004 ATGGCGCTGTTCAGAAGGTTCTTCTACCGGAAGCCGCCGGATCGGCTTCTGGAGATTTCCGAGAGAGTTTATGTTTTTGATTGTTGCTTCTCCCCGGATGTCTTGGAAGAAGATGAATATAGAGTTTATATGGGGGGGATTGTGGCTCAGCTACAGGATCACTTTCCAGATGCTTCTTTCATGGTATTCAACTTCAGAGAAGGGGAGAGACGCAGCCAAATCTCAGACATATTTTCTCAATATGACATGACAGTTATGGAGTACCCTCGGCAATATGAGGGTTGTCCTGTTCTGCCTTTAGAGATGATCCATCACTTCCTTCGATCAAGTGAAAGCTGGTTGTCTCTGGAGGGGCAACAAAATGTGCTTTTGATGCATTGTGAAAGGGGAGGTTGGCCCGTGCTGGCATTTATGCTAGCAGGTCTTCTGTTATACCGGAAACAGTACAGCGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCTCCAAGAGAATTACTACACATATTGTCTCCTTTGAATCCTCAGCCTTCCCATTTAAGATATCTTCAGTATATTTCCAGGAGAAATTTGGGTGCTGAGTGGCCACCATCGGAAACACCCTTATATTTGGATTGTTTGATTCTTAGAGTCCTTCCAGTATTTGACGATGGAAAAGGTTGCAGGCCTGTTGTACGTGTTTATGGTCAGGACCCTTCAGTTTCTGCCAATAGAAGTTCAAAGCTTATTTTTTCAACTTCACAATCCAAGAAACATGCTCGCCACTACCTACAGGCAGAGTGTGTGCTCGTGAAAATTGACATGCATTGTCGTGTTCAAGGGGACGTGGTTCTTGAGTGCATACATTTAAGTGATGATTTTGTTCGCGAGGAATTGATGTTTAGAGTTATGTTTCATACTGCATTTGTGCGGTCAAATATTTTGATGCTGAACCGTGATGAAATTGATATTCTGTGGGAGGCAAAGGACCTATTTCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTAACCACAGTCACGGTGAGTGAAGATGCAAATGAGATTGAAAGTGCTGAGACAGAAAGTGCTTCACCGGATGAGTTCTATGAAGTAGAAGAAATCTTCAGCAGTGTAATTGATTATAGATTCAGATCCTCATGCAGTGAAGGACATTGCTGTCGACGATGGAGAAATTAA 1206 0.4337 MALFRRFFYRKPPDRLLEISERVYVFDCCFSPDVLEEDEYRVYMGGIVAQLQDHFPDASFMVFNFREGERRSQISDIFSQYDMTVMEYPRQYEGCPVLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPRELLHILSPLNPQPSHLRYLQYISRRNLGAEWPPSETPLYLDCLILRVLPVFDDGKGCRPVVRVYGQDPSVSANRSSKLIFSTSQSKKHARHYLQAECVLVKIDMHCRVQGDVVLECIHLSDDFVREELMFRVMFHTAFVRSNILMLNRDEIDILWEAKDLFPKDFKAEVLFLDADAVIPDLTTVTVSEDANEIESAETESASPDEFYEVEEIFSSVIDYRFRSSCSEGHCCRRWRN* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01004 401 Gene3D Protein tyrosine phosphatase superfamily 14 201 IPR029021 -
Lapu3g01004 401 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lapu3g01004 401 Gene3D - 202 342 - -
Lapu3g01004 401 SMART PTEN_C2_2 198 338 IPR014020 -
Lapu3g01004 401 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Lapu3g01004 401 PANTHER FORMIN-J 1 382 - -
Lapu3g01004 401 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Lapu3g01004 401 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01004 Lapu-Chr3 10789577 10812474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01004 1 383 FH2 protein (formin) Gene Family AT5G07740 78.590 0.0 636
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01004 - - pvu:PHAVU_003G1878001 761.911