Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01003 ATGGGGTGTGTGGTGGCGAAGCAGGCGGTTTCGGTCACGCCTGCAATTGAGCACTCTGTTGAGTCGGATAAGAACAGGAAGAAGAAGACTGAGTCAGGTAGGAGCGAGTTGGGTGAGTCTGGGAGAGCGAGTTCCAATGGTGGAAGTGAGTCTCTGAGCTTCAGGTTGGGGAACCTGAGCAAGTACGTGGAGGGAGAGCAGGCGGCGGCGGGTTGGCCGGCGTGGCTCAGCGCCGTCGCGAGTGAGGCCATTCACGGTTGGGTTCCTCTTCGAGCTGACGCATTTGAGAAACTTGAAAAGATTGGCCAGGGAACATATAGTAGTGTTTTTCGAGCAAAGGAGATTGAGACCGGAAAGATAGTAGCTTTGAAGAAGGTGAGATTTGACAATTTTGAGCCAGAGAGTGTGAGGTTTATGGCTCGAGAAATAATGATTCTTAGGAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCTAGATTGTCTTGTAGCATATACCTTGTCTTTGAGTACATGGAGCACGACATCACGGGGCTCTTGTCTAGACCAGAAATCAAGTTTAGCGAATCACAGATCAAATGCTACATGAAACAGTTGTTATCTGGTCTTGAGCACTGTCACTCACGGGGTGTGATGCACCGTGACATCAAGGGATCAAATCTTTTAGTGAATAATGAAGGGATATTGAAAGTGGCAGATTTTGGACTGGCAAATTTCTCTAATTCTGGGAGCAAGCAGCCCCTCACTAGTCGTGTAGTCACGTTATGGTACCGTCCTCCAGAACTTTTGCTCGGTTCAACAGAATATGGTCCATCCGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAATTACTAATTGGGAAGCCTATACTTCAGGGGAGAACTGAGGTTGAACAGTTGCACAAAATTTTCAAGCTTTGTGGCTCTCCACCCGAAGAATACTGGAAAAAGACCAGACTTCCTCATGCAACATTGTTCAAGCCGCAGCAACCATACGATAGTTGCCTCCGAGAGACATTTAAAGATTTTCATGTATCTAGTGTAAATCTTCTACAAATTCTTCTTTCTGTTGAACCAAGCAAACGTGGGGCTGCCTCCTCTGCTCTCTCATTAGAGTATTTCAAAACAAAACCTTATGCATGCGACCCATCAAGCTTACCAATATACCCACCTAGCAAGGAGATTGATGCGAAACACGAAGAGGAGTCAAGAAGGAAAAAAATTGGTGGGCGAGCTGGTGGACCAGAATCAAGAAAACCGTCAAGAAAGCCACTAGGACTGAGTAAATTAGCCCCATCAGAGGATTTGACAACTCAAACTCAAACTTCCCGAAAGATGGATGATAGATGTGTTCACATCCTTAAAGAAGAGAGCACTAATCCATGTGAGGAGGCACCAAAGCAGTCTAGTGGTAAACCAGACGATGCTTCCCATGTGAAGAATGCATCTCAAGTAGATATTCCCTTTCCTGGACCGTTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCAAAAAGGCGTAGAGATGACACTTCAATTAGAACTCACAGTCGGTCTATTTCTAGAGGATATATCTTTAATTCATTGGAAACTTCTACACTAAATTCAAGGAATAATTCTGAATCCAGAAACTACGAAAATAATGAATTTTTCGGAACATGCACCAACTCTAAGGGCCATGACCTACTCGAAATTTCTAAGCTTGCCATGAAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTGAGGAGTACCATTCACAAGAACTGTCCATGGCGCTTTATAACAGGCAAGATTCACTATCCAAGAGAAGTAACCTGAGTTACCAGGATCAAGGAGAAAAGGTAGAGTTTTCAGGGCCTCTACTATCTCAAATGCACACCGTTGATGAGCTCTTAGAAAGACATGAGCGTCACATCCGGCGTACTGTCAGAAGATCATGGTTTCAGAGAGGTAAGAAGCAAGGGAAGTAA 1998 0.4454 MGCVVAKQAVSVTPAIEHSVESDKNRKKKTESGRSELGESGRASSNGGSESLSFRLGNLSKYVEGEQAAAGWPAWLSAVASEAIHGWVPLRADAFEKLEKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGSKQPLTSRVVTLWYRPPELLLGSTEYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKTRLPHATLFKPQQPYDSCLRETFKDFHVSSVNLLQILLSVEPSKRGAASSALSLEYFKTKPYACDPSSLPIYPPSKEIDAKHEEESRRKKIGGRAGGPESRKPSRKPLGLSKLAPSEDLTTQTQTSRKMDDRCVHILKEESTNPCEEAPKQSSGKPDDASHVKNASQVDIPFPGPLQVSKSSGFAWAKRRRDDTSIRTHSRSISRGYIFNSLETSTLNSRNNSESRNYENNEFFGTCTNSKGHDLLEISKLAMKNQWSKFDRPDSFDTEEYHSQELSMALYNRQDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKQGK* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01003 665 SMART serkin_6 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01003 665 MobiDBLite consensus disorder prediction 393 484 - -
Lapu3g01003 665 FunFam probable serine/threonine-protein kinase At1g54610 178 417 - -
Lapu3g01003 665 Gene3D Phosphorylase Kinase; domain 1 82 177 - -
Lapu3g01003 665 Gene3D Transferase(Phosphotransferase) domain 1 178 417 - -
Lapu3g01003 665 SUPERFAMILY Protein kinase-like (PK-like) 88 386 IPR011009 -
Lapu3g01003 665 Pfam Protein kinase domain 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01003 665 MobiDBLite consensus disorder prediction 398 423 - -
Lapu3g01003 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Lapu3g01003 665 ProSiteProfiles Protein kinase domain profile. 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01003 665 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Lapu3g01003 665 MobiDBLite consensus disorder prediction 446 479 - -
Lapu3g01003 665 FunFam probable serine/threonine-protein kinase At1g54610 82 177 - -
Lapu3g01003 665 MobiDBLite consensus disorder prediction 16 50 - -
Lapu3g01003 665 MobiDBLite consensus disorder prediction 19 36 - -
Lapu3g01003 665 CDD STKc_CDK9_like 95 379 - -
Lapu3g01003 665 PANTHER CELL DIVISION PROTEIN KINASE 93 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01003 Lapu-Chr3 10763837 10769592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01003 87 411 Core Cell Cycle Gene Families AT5G10270 51.906 7.56e-116 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu3g01003 Pkinase 9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01003 - - gmx:100784406 1185.24