Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01001 ATGTCGGACGAAGAGCACCATTTCGAGTCCAAGGCTGACGCCGGTGCCTCCAAAACCTACCCTCAGCAAGCCGGTACAATTCGCAAGAACGGTTACATCGTCATCAAGAGTCGTCCCTGCAAGGTTGTGGAAGTTTCTACTTCTAAAACTGGAAAGCATGGTCACGCTAAGTGTCATTTTGTTGGGATTGATATTTTCACTGCCAAGAAACTTGAGGATATTGTGCCCTCCTCTCACAACTGTGATGTTCCACATGTGAATCGTACTGACTACCAGCTCATTGATATATCTGAGGATGGATTTGTGAGTCTGCTCACTGAAAATGGGAATACTAAGGATGACCTCAGACTCCCCACTGATGAAAGTTTGCTGACTCAGGTTGGCTCTATCCTAATAAAGGATGGATTTGCCGAGGGCAAGGATCTTGTTGTGTCTGTCATGTCTGCTATGGGTGAGGAACAAATTTGTGCTCTGAAGGATATTGGGCCGAAGAACTAG 498 0.4618 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDESLLTQVGSILIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01001 165 CDD S1_eIF5A 86 161 - -
Lapu3g01001 165 Gene3D - 1 85 IPR014722 -
Lapu3g01001 165 SUPERFAMILY Nucleic acid-binding proteins 86 161 IPR012340 -
Lapu3g01001 165 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 162 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lapu3g01001 165 SMART eIF_5a_2 85 159 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lapu3g01001 165 FunFam Eukaryotic translation initiation factor 5A 86 163 - -
Lapu3g01001 165 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Lapu3g01001 165 PIRSF Transl_init_eIF5A 1 162 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lapu3g01001 165 MobiDBLite consensus disorder prediction 1 21 - -
Lapu3g01001 165 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 159 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lapu3g01001 165 NCBIfam translation initiation factor IF-5A 17 158 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lapu3g01001 165 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lapu3g01001 165 Gene3D - 86 164 IPR012340 -
Lapu3g01001 165 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01001 Lapu-Chr3 10746199 10748826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01001 1 164 Eukaryotic Initiation Factors Gene Family AT1G13950 86.585 6.67e-102 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01001 K03263 K02180 gmx:100820467 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01001 3 10746199 10748826 Lapu3g01001 3 10746199 10748826 ECH