Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00985 ATGGAAAGAGATCAAATTCAAGAATTGAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCTTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCATATCACCAACTTGTCGTCGGGGGAAAAAGAAAAGCTTCCGACGAGGAAGCTTCTTTCATCGCCTCTCGACAATGATGGAGACAAAGATTCTGAAGCTGCTGCAACCAACGCTGGCTATGGCCTCAGAGAGAACCCCAAGAAGACTTGGAGAATCTCAGATCATTCAAGCGAAGACGCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGCGTTCCACTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCACTCCGAGAAAGAGAGAGTTTCCAACAGCTTGGAAGATCAAGATTCGTGGACTAATGCTAAGGTAGTTATGGATAGTCAATCTGATAACGAAGCAACTGCTCCAAATAAGAGGAGAAGGTCCAAGAGAAGAACAAGGTACACGGTTGCTTCTGCTGCAGCAACTTCTTCAGTTGTGTCTTTTGCCAATCCTTCTTCTTCTCTCTCTGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGACGTGAGTCCTTGGAGTGGTCCTCATTCTGTTGCCGAGTCCTCTGACAACAACTCTGCTTATTTCGAAGCTCGATCTTCAGTTCGAACTAATCTGGTTGCCAAATTTGATGACAACAATAACTTCACGCCTAACACAGCAAGAATGATCAAGCAAAGTGATAATAAGTGGGAGGTTGGCAATTCGGAAAATCCCAACTCGATCAGAGGAAAGAGTTCACAGCGTTTGACTACTACTGATGCTACTATGGAGATTACTGAAAATGGATTTAGAGTTAACAAAAGCGGAGTTTCCAATAAAGGATATGAAAAGGTCAACAAGTCTGAGCTTCAGTATGTGTCTGCATTGGAGGATTCAGAAGGGGAACATGGGAGGAGCAGAGTCAATGGACCAGAATCAATTTTATCGAAGTCCGCTACTACTGACAACAAGTACTATTCAATCAAGACAAAGTTCCTCGGTTCTGAGTTGAAGTCAAACAAGAACTGGGTGGACAAGGCTTCAGAAGCTGAATCTAGCAAGAACTCTCACAAGAGAGGCAAGTTTGAGTGTACCACTTGCAATAAAATCTTCCACTCATACCAAGCTCTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAGGGGTGCTTTGCTTCGAGAAATGAGAGCAGTGAAAACAGCATTGAAACTGATCTCTCTCCCGACCCAGTAACAACCGAAAACAAGCTCATGAAGAACACTGACCGTGAGTATCTGGGGGAACACCAACATGGTGCTGGTTTTCATAATGAGATGGAAACAGTGGCAACAGTTACTGAGTCCAAGAAGAACAAGGGGCATGAGTGCCCAATTTGCCTCAAAGTTTTTCCATCAGGCCAAGCCTTGGGTGGCCATAAGAGATCTCATATGACTGGTGGGTCTGAGAGTAGAAACTTTCAGACAGTTGTACTTCAGGAACCAGTGGCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTGCTACTGAGGAAGAAAGCAATAGTCATGCTGACTCTAACAGACCCTGGTGGGTAGTAGAAGACAACCACAAGCAGGAGGCACTGGTAGGCCTGATCTCATAG 1701 0.4533 MERDQIQELKHACKFCGKCFPCGRSLGGHMRSHITNLSSGEKEKLPTRKLLSSPLDNDGDKDSEAAATNAGYGLRENPKKTWRISDHSSEDALVFDKFCKECGKAFHSWKALFGHMKCHSEKERVSNSLEDQDSWTNAKVVMDSQSDNEATAPNKRRRSKRRTRYTVASAAATSSVVSFANPSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGPHSVAESSDNNSAYFEARSSVRTNLVAKFDDNNNFTPNTARMIKQSDNKWEVGNSENPNSIRGKSSQRLTTTDATMEITENGFRVNKSGVSNKGYEKVNKSELQYVSALEDSEGEHGRSRVNGPESILSKSATTDNKYYSIKTKFLGSELKSNKNWVDKASEAESSKNSHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIETDLSPDPVTTENKLMKNTDREYLGEHQHGAGFHNEMETVATVTESKKNKGHECPICLKVFPSGQALGGHKRSHMTGGSESRNFQTVVLQEPVAEIRDFLDLNLPAATEEESNSHADSNRPWWVVEDNHKQEALVGLIS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00985 566 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 550 - -
Lapu3g00985 566 MobiDBLite consensus disorder prediction 37 63 - -
Lapu3g00985 566 Gene3D Classic Zinc Finger 1 124 - -
Lapu3g00985 566 MobiDBLite consensus disorder prediction 262 281 - -
Lapu3g00985 566 Gene3D Classic Zinc Finger 384 501 - -
Lapu3g00985 566 ProSiteProfiles Zinc finger C2H2 type domain profile. 387 414 IPR013087 -
Lapu3g00985 566 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Lapu3g00985 566 SUPERFAMILY beta-beta-alpha zinc fingers 8 35 IPR036236 -
Lapu3g00985 566 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 33 IPR013087 -
Lapu3g00985 566 MobiDBLite consensus disorder prediction 141 163 - -
Lapu3g00985 566 Pfam C2H2-type zinc finger 479 502 - -
Lapu3g00985 566 Pfam C2H2-type zinc finger 99 121 - -
Lapu3g00985 566 Pfam C2H2-type zinc finger 11 33 - -
Lapu3g00985 566 Pfam C2H2-type zinc finger 387 411 - -
Lapu3g00985 566 ProSitePatterns Zinc finger C2H2 type domain signature. 389 409 IPR013087 -
Lapu3g00985 566 ProSiteProfiles Zinc finger C2H2 type domain profile. 479 501 IPR013087 -
Lapu3g00985 566 MobiDBLite consensus disorder prediction 37 72 - -
Lapu3g00985 566 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Lapu3g00985 566 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Lapu3g00985 566 SMART c2h2final6 97 119 IPR013087 -
Lapu3g00985 566 SMART c2h2final6 387 409 IPR013087 -
Lapu3g00985 566 SMART c2h2final6 11 33 IPR013087 -
Lapu3g00985 566 SMART c2h2final6 479 501 IPR013087 -
Lapu3g00985 566 SUPERFAMILY beta-beta-alpha zinc fingers 98 409 IPR036236 -
Lapu3g00985 566 ProSitePatterns Zinc finger C2H2 type domain signature. 481 501 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00985 Lapu-Chr3 10627887 10630264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00985 4 537 C2H2 Transcription Factor Family AT1G26610 33.152 4.70e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g00985 zf-C2H2_6 2.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00985 - - gmx:102669916 904.434