Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00974 ATGGCGTCTTCGTCGTCGTTGGCGAAGCGATGCCACTACGAAGTGCTCGATCTCCCCCGCGACTGCGCCCCCGAAGAGATCCGCTCCTCCTACCGCCGCCTCGCCCTTCAGCGCCACCCGGACAAACTTGTAAAATCAGGACTCTCCCAAGAGGAAGCCACCGCGCAGTTCCAGGAACTTCAACACGCCTACGAAGTCCTCTCCGACCCCAAGGAACGTGCTTGGTACGATTCCCATCGTTCCCAGATCCTGTTCTCCGACCCCGATTCCCGCTCTAATTCACTCGTCCCCGACCTCTTCTCCTTCTTCTCCAACACCGTCTATTCCGGCTACTCCGACACCGGAAAGGGATTCTATAAAGTTTATTCTGATGTTTTCGATAAAATCCACGCTAACGAGATCAATTTCGCGCGGAAATTGGGGCTCGGAGTTGATGCGGTTCGACAGGCTCCTGTAATGGGGAACTTGGATAGCCCCTACGCGCAGGTCACTGCGTTTTATGGATATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGTTGGGTGGACGAGTATGATGCTATGGCGGGGCCGAACCGGAAGTCGCGGCGGCTTATGGAGGAGGAGAATAATAAGGCAAGGAGGAAGGCGAGAAGGGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGACATGAGGGTGAAGAGGAGTGTGGAAATGGAGCGGAAGAAGGAAGAGGAGAGGGAGAGGAAGAAGAGGTTGGAGAAGGAGAGGAAGGAGAGGGCCATGGCGTATGAGGAGCCTGATTGGTCTAAGGTTGAGGGGGAGGAGGTGGTGGACGATTGGGTTGAGGAGGAGGAGGAGGAGAAGAAGGAGAAGGAGTTTTATTGTGTGCTGTGTGGGAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCGGAGTTCAAAGATTCCATTGGTGATGAGGAGGATTTGGAAGAAGGAAAGGAGGGATTGGGAAGTGAGGAAGATGGGGTTGGGGTGAATGATGATGGTGGTTATGGGGTTGGGGTGAATGGTGATGGGGTTGATGATTTGGAGGCGAGGATTCGGGATGGTCTTAATGTTGAAGAGGGGTTAACTAGAAACGAGGGTGAAGTGGATGACGAGGATGAGTTTTCCGATGCTTCGCATGTGAAGGAAGGGGAAGATGCCAACGGGTCTGTTAATCTTGATGATGATGGCAATGCAGATGATGATAACGATGAAAATGGTGTTCTTGAAGCAATGGTGGCGGGCCACATGAGCAGAAAACCACGAGCTTCAACGCACAAATCCAAGGCTTCGATAGCTCCATCTCAAGTTGAAAACGAGAATGGTGAGGTTGGCCCTATGGAATATAACAACCGGAAGAGCAAAGGAAAGAAACGTAGGAAGGAGAAGGGTAGGAAAATTTGGGAAGAATCTCAGGGGGCTGCTGCCAGTCGCAATGATGAGAATGTAAACAGTAATGGTAATGTCAATTCTCATGCAGAGGAGTCTTGTTCCCAACATTTTGTGGAAAATGAGGATAATGGTATAGGGAATGAGCAGGTTAGTAGAGATAGTAAGATTTCAAATCAACCCGCTGATAAAAAAGGAGCTGCCAAGGACACAAAAATTAAAGCTAAAATTTCATCCAAAGGAAGAAAAGCAAAGGTGACATCAAAGAACATAGGTAATACTTGTGATGCGTGTGGAGAGGAGTTTGAGTCAAGAAATAAATTACACGAACATCTTGGCGATTCTGGGCATGCGACAATAATAAGAGGTCGATGA 1839 0.4899 MASSSSLAKRCHYEVLDLPRDCAPEEIRSSYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPDSRSNSLVPDLFSFFSNTVYSGYSDTGKGFYKVYSDVFDKIHANEINFARKLGLGVDAVRQAPVMGNLDSPYAQVTAFYGYWLGFCTVMDFCWVDEYDAMAGPNRKSRRLMEEENNKARRKARREYNDTVRRLGDFVKKRDKRVIDMRVKRSVEMERKKEEERERKKRLEKERKERAMAYEEPDWSKVEGEEVVDDWVEEEEEEKKEKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFKDSIGDEEDLEEGKEGLGSEEDGVGVNDDGGYGVGVNGDGVDDLEARIRDGLNVEEGLTRNEGEVDDEDEFSDASHVKEGEDANGSVNLDDDGNADDDNDENGVLEAMVAGHMSRKPRASTHKSKASIAPSQVENENGEVGPMEYNNRKSKGKKRRKEKGRKIWEESQGAAASRNDENVNSNGNVNSHAEESCSQHFVENEDNGIGNEQVSRDSKISNQPADKKGAAKDTKIKAKISSKGRKAKVTSKNIGNTCDACGEEFESRNKLHEHLGDSGHATIIRGR* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00974 612 ProSitePatterns Zinc finger C2H2 type domain signature. 583 605 IPR013087 -
Lapu3g00974 612 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Lapu3g00974 612 MobiDBLite consensus disorder prediction 400 414 - -
Lapu3g00974 612 MobiDBLite consensus disorder prediction 371 389 - -
Lapu3g00974 612 CDD DnaJ 11 69 IPR001623 -
Lapu3g00974 612 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Lapu3g00974 612 SMART c2h2final6 298 322 IPR013087 -
Lapu3g00974 612 SMART c2h2final6 581 605 IPR013087 -
Lapu3g00974 612 MobiDBLite consensus disorder prediction 310 580 - -
Lapu3g00974 612 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 5 608 IPR044648 -
Lapu3g00974 612 Pfam DnaJ domain 12 77 IPR001623 -
Lapu3g00974 612 ProSiteProfiles Zinc finger C2H2 type domain profile. 298 327 IPR013087 -
Lapu3g00974 612 SMART dnaj_3 10 72 IPR001623 -
Lapu3g00974 612 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Lapu3g00974 612 Gene3D DnaJ domain 2 94 IPR036869 -
Lapu3g00974 612 SUPERFAMILY beta-beta-alpha zinc fingers 287 338 IPR036236 -
Lapu3g00974 612 SMART ZnF_U1_5 295 329 IPR003604 GO:0003676|GO:0008270
Lapu3g00974 612 MobiDBLite consensus disorder prediction 310 332 - -
Lapu3g00974 612 Pfam Zinc-finger double-stranded RNA-binding 298 323 IPR022755 -
Lapu3g00974 612 MobiDBLite consensus disorder prediction 546 565 - -
Lapu3g00974 612 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Lapu3g00974 612 Coils Coil 196 216 - -
Lapu3g00974 612 PRINTS DnaJ domain signature 13 31 IPR001623 -
Lapu3g00974 612 PRINTS DnaJ domain signature 31 46 IPR001623 -
Lapu3g00974 612 PRINTS DnaJ domain signature 52 72 IPR001623 -
Lapu3g00974 612 Coils Coil 240 267 - -
Lapu3g00974 612 Gene3D Classic Zinc Finger 286 348 - -
Lapu3g00974 612 MobiDBLite consensus disorder prediction 500 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00974 Lapu-Chr3 10523778 10526673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00974 1 608 C2H2 Transcription Factor Family AT1G74250 50.767 2.52e-178 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g00974 DnaJ 3e-20 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00974 K09506 - gmx:100788305 894.419