Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00970 ATGGCTTTCTTTGGTAGAATTGGGAATATGTTAAGACAGACAGTTAGCAGACAGGTTAGTTCAGAGTTGCGTTCGTCCCCATCCTTTTTTCAGGCTATACGCTGTCTGTCTTCTGCTCCAAGCTCCAAGCTGTTCATAGGAGGTGTTTCGTTTTCCACTGATGAGCAAAGCTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATCGTGAAACTGGAAGATCTAGGGGGTTTGGATTTGTTACATACACTTCTGTTGAGGAGGCATCGAGTGCCATTCAGGCCTTGGATGGTCAGGACCTTCATGGTCGCCAGATTAGGGTAAATTATGCTAATGAAAGAACTCGTGGATATGGTGCTGGAGGTGGCGGCTATGGAGGTGGTTATGGTGGCTCTTCATATGGTGGTGGCGGCGGTGGCTATGGTGGAAATGTTGCTGGAGGTTATGGTGGTGGTAGCTATGGTGGAAACGCTGGTGGTGGTTATGGTGGAAATGCTGGTGGTGGTTATGGTGGTGGTAGCTATGGTGGAAATGCTGGTGGTGGTTATGGTGGTGGCAGCTATGGTGCAGGTGGCTATGGATCAAGTGGCAATTTTGGGGACAGTGGCTCTGGCAATAACTATCCTGCTGCTGACAGTTTTGGAACTGGTGGTGCTGGGGGCAGCTACAGTGGTAACTTTAATGGTGCTGGTGGAGTAGGCAATCATGAAAGCTCTGCTGGCTTTGGCAGTAGTGGTGTGGATGGTGGTACTGGCAGCAGCTTTGCTGATGGAAGTGGAGGGTTGGGCAGTGGTCAATTTGATAGCAAAGAAAGCAGCAATGGAGATGAGGATTTGGGAGATTACAGGGATGACAATGACGATGCTGATAATTTTGCCAAAAGGGCTTGA 912 0.4825 MAFFGRIGNMLRQTVSRQVSSELRSSPSFFQAIRCLSSAPSSKLFIGGVSFSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFVTYTSVEEASSAIQALDGQDLHGRQIRVNYANERTRGYGAGGGGYGGGYGGSSYGGGGGGYGGNVAGGYGGGSYGGNAGGGYGGNAGGGYGGGSYGGNAGGGYGGGSYGAGGYGSSGNFGDSGSGNNYPAADSFGTGGAGGSYSGNFNGAGGVGNHESSAGFGSSGVDGGTGSSFADGSGGLGSGQFDSKESSNGDEDLGDYRDDNDDADNFAKRA* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00970 303 Gene3D - 31 153 IPR012677 -
Lapu3g00970 303 SMART rrm1_1 43 116 IPR000504 GO:0003723
Lapu3g00970 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Lapu3g00970 303 SUPERFAMILY RNA-binding domain, RBD 39 150 IPR035979 GO:0003676
Lapu3g00970 303 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 213 - -
Lapu3g00970 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Lapu3g00970 303 FunFam Glycine-rich RNA-binding protein 3 mitochondrial 20 145 - -
Lapu3g00970 303 MobiDBLite consensus disorder prediction 248 303 - -
Lapu3g00970 303 MobiDBLite consensus disorder prediction 248 277 - -
Lapu3g00970 303 CDD RRM2_NsCP33_like 43 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00970 Lapu-Chr3 10491687 10495406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00970 39 207 Eukaryotic Initiation Factors Gene Family AT2G36660 23.529 1.35e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00970 K12741 - gmx:100799124 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00970 3 10491687 10495406 Lapu3g00970 3 10491687 10495406 ECH