Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00967 ATGGCCGCAAAATCAGTCACACCCGACGCCGTTTCGACGCTCCTAGCTAATCCTTCCCCCGATTCTTCGTCGGATCTTCCCGACATCGTTGTTCAAGTCATCGATCTCAAGCCGAGCGGCAATAGATACATGTTCTCTGCCAGTGATGGAAAAATGAAACTGAGGGCGATTCTTCCTTCGAATATGTATTCTGAGGTTCTGTCCGGGAACATTCAAAACCTAGGTCTTGTTCGCATCCTTGATTACACTCTCAATGACATCCCTAACAAATCGGAGAAGTACCTTATTGTCACGAAATGTGAACCCGTATCTCCCGCACTCGAAAAGGAGATCAAGATTGAGGGGCCTGGTATTCTTTTGAAACCCAAGGAAGAGGTTGGAGTGAAGAGTGAAGGTGCTTCTGGGATTCTTTTGAAACAAAAGCAAGAAGTGGTGACAAAATCTGCTGCTCAGATTCTAAATGAACAACATAGAAATTCGGCTCCTGCTGCACGCTTAGCAATGACACGTAGGGTGCGTCCTCTTGTGTCGTTAAACCCTTATCAGGGTAATTGGACAATAAAGGTTAGCGTTACGAGCAAAGGAAACATGCGAACCTATAAGAACGCTAGGGGTGAAGGTTGTGTATTCAATGTTGAACTGACGGACGAAGAAGGTACTCAGATCCAGGCAACTATGTTTAACGACGCCGCGAGGAAATTTTATGACAGATTTGTTCTGGGAAAGGTTTATTATATTTCGAAGGGGACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTACAAAATGATTATGAAATGACGCTCAATGAGAATTCTGAGGTGGAAGAAGTGGCGGATGAAGCAAGTTTTGTCCCGGAAACAAAATTTAGCTTTGTCCAGATTGATCAGCTTGGTCCTTATGTCAACAAGTCCGAACTTGTGGATGTCATTGGAGTTGTTAAGGACGTGTCTTCAACAATGAGCATTCGTAGGAAGAGTGACAACGAGAGCATTCCAAAGCGCGACATTACTATTGCTGATGAAACGAAGAAGACAGTTGTTGTGTCTTTGTGGAATGATCTTGCTACTAATACAGGACAAGATTTACTGGACATTGCTGATAAATCTCCAGTTATTGCAATCAAGTCTCTCAGGGTTGGGGATTTCCAAGGTGTTTCTTTGTCAACTATAAGCAGAAGTGTAATTCTGGTAAACCCAGACGTACCCGAAGCAAAGAAACTCAGAAGCTGGTATGAATCTGAAGGCAAAGATGCTACTATGGACTCTGTAGGTTCTGGTTCAAGTCCAACATCTAATAATGGAACCAGATCAGTGTACTCTGATCGTGTTCCACTTTCTCACATAACCTCAAACCAATCATTGGGCGATACGAAGCCTGCATTTTTCAGTCTTAAAGGATACATAAGCTTCATAAAGCCTGACCAGGCAATGTGGTATCGTGCGTGTAAGACATGCAATAAGAAAGTTACTGAAAACATTGGTTCTGGATATTGGTGTGAAGGATGCCAGAAAAGCGATGAACAGTGCAGTTTAAGGTATATTATGGTTGCAAGAGTTTGCGATACAAGTGGTGAGGCTTTCGTTTCTGTCTTTAACGAGGAAGCTGAGAAGATTGTTGGATGCTCTGCTGATGATTTAGATGACCTTAAATCACAAGAAGGAGAAGATAATCCTTATAATCTGAAATTGAAGCAAGCAACTTGGGTTCCACATCTTTTCCGCGTTAGTGTTACCCAGAATGAGTATAATAACGAGAAGCGGCAAAGGATAACAGCTCGGGCAGTTGTTCCTGTTGACTTTGCTGCTGAGTCAAGGATTATGCTGGAAGAAATATCAAAGATGAGAGCATAA 1854 0.4256 MAAKSVTPDAVSTLLANPSPDSSSDLPDIVVQVIDLKPSGNRYMFSASDGKMKLRAILPSNMYSEVLSGNIQNLGLVRILDYTLNDIPNKSEKYLIVTKCEPVSPALEKEIKIEGPGILLKPKEEVGVKSEGASGILLKQKQEVVTKSAAQILNEQHRNSAPAARLAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFYDRFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVADEASFVPETKFSFVQIDQLGPYVNKSELVDVIGVVKDVSSTMSIRRKSDNESIPKRDITIADETKKTVVVSLWNDLATNTGQDLLDIADKSPVIAIKSLRVGDFQGVSLSTISRSVILVNPDVPEAKKLRSWYESEGKDATMDSVGSGSSPTSNNGTRSVYSDRVPLSHITSNQSLGDTKPAFFSLKGYISFIKPDQAMWYRACKTCNKKVTENIGSGYWCEGCQKSDEQCSLRYIMVARVCDTSGEAFVSVFNEEAEKIVGCSADDLDDLKSQEGEDNPYNLKLKQATWVPHLFRVSVTQNEYNNEKRQRITARAVVPVDFAAESRIMLEEISKMRA* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00967 617 FunFam Replication protein A subunit 284 423 - -
Lapu3g00967 617 Gene3D - 426 615 IPR012340 -
Lapu3g00967 617 FunFam Replication protein A subunit 428 615 - -
Lapu3g00967 617 Pfam Replication protein A OB domain 302 399 IPR031657 -
Lapu3g00967 617 NCBIfam replication factor-a protein 1 (rpa1) 5 614 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lapu3g00967 617 SUPERFAMILY Nucleic acid-binding proteins 173 282 IPR012340 -
Lapu3g00967 617 Pfam OB-fold nucleic acid binding domain 185 271 IPR004365 GO:0003676
Lapu3g00967 617 Gene3D - 285 425 IPR012340 -
Lapu3g00967 617 SUPERFAMILY Nucleic acid-binding proteins 290 419 IPR012340 -
Lapu3g00967 617 FunFam Replication protein A subunit 5 115 - -
Lapu3g00967 617 CDD RPA1_DBD_A 174 277 - -
Lapu3g00967 617 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Lapu3g00967 617 CDD RPA1_DBD_B 307 413 - -
Lapu3g00967 617 Gene3D - 171 281 IPR012340 -
Lapu3g00967 617 SUPERFAMILY Nucleic acid-binding proteins 441 615 IPR012340 -
Lapu3g00967 617 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lapu3g00967 617 PANTHER REPLICATION FACTOR A 1, RFA1 185 578 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lapu3g00967 617 MobiDBLite consensus disorder prediction 421 439 - -
Lapu3g00967 617 Pfam Replication factor-A C terminal domain 462 607 IPR013955 -
Lapu3g00967 617 MobiDBLite consensus disorder prediction 418 439 - -
Lapu3g00967 617 CDD RPA1_DBD_C 446 614 IPR047192 -
Lapu3g00967 617 Gene3D - 5 117 IPR012340 -
Lapu3g00967 617 FunFam Replication protein A subunit 171 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00967 Lapu-Chr3 10478668 10482323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00967 5 614 Core DNA Replication Machinery Family AT5G08020 69.885 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00967 K07466 - gmx:100777091 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00967 3 10478668 10482323 Lapu3g00967 3 10478668 10482323 ECH