Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00962 ATGATGATGAATGAAAGTTCAAGTAAAGGTCACCAAGGCAATCAACAAGAGGGTGAGAACATTAAAATTGAGAAGTTCTCAAAGGCTCCCTCCACCTCAAGATCATGGTCATCATTCAGAAACCCAAGAATTGTACGAGTCTCACGTTCTTTGGGAGGAAAAGACAGGCACAGCAAGGTTTGCACCGTTAGGGGACTGAGAGACAGAAGGATTAGACTGTCTGTACCCACAGCAATTCAGTTATATGATCTTCAAGACAAGCTTGGACTCAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGTCACCAAATCTGATATTGATAAACTCCCACCACTTCACTTTCCTCACTGTTTTCCTCAGTTTCACCAACAAACCCCACTGCCAGGTACCTCTCAGTTTTCTATTGGAAGCTTCTACGATGGTGCTAATTCCACTTTTATAAAGGATGGGGGAAATCAAAACCTCATGGCAAAGTCAACAAGGTATTGGGATATAGATTCACAAAACCGTAAGGAGTTAGCTGAAAGTGTGTCAACCTCCCAAAAGGGAAAGTTCTGGATCAAAACAAATGAACTCGAAAATCATCAAAATGGAATTGGTGGTAGTTCTCGTAATAGAGAAGAATCACCAGCTCATTATAAGCTCTTCCCCCTTGGGACAAATAGCTCTTATTTACCTGGTTTGTCAAACAGTGGCATGGCACATAACACCTACCCTCATTCTGAGCCTTCAAGCCTATCTTTATCCCACCTTGGAAACCATGGATTATTTCCTTCCCATCCAAGCAGTAGCAGTGGCAGTGGTCTGCAATTTTCATCTTCTAATTTCTCTGGAACATCTGGTCCCCAATTACTTTTTTGTCCACCTTCTGCTACACCGTCTGCTTTTTACTCAGCGGAAAGTGATCCAAGGCAATCCAACAATGTTCAGATCTTTAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTCATCCACTCTATTAATTCCACAAGTTCACCTCTTAGACGCCTTCCAACATCATTTAGTTCCAAGCTTCTTGATTCAGATAATAATGATCGTAGCCAACGAGATACTGGTAGCACTCGTTCTTGA 1101 0.4242 MMMNESSSKGHQGNQQEGENIKIEKFSKAPSTSRSWSSFRNPRIVRVSRSLGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLHFPHCFPQFHQQTPLPGTSQFSIGSFYDGANSTFIKDGGNQNLMAKSTRYWDIDSQNRKELAESVSTSQKGKFWIKTNELENHQNGIGGSSRNREESPAHYKLFPLGTNSSYLPGLSNSGMAHNTYPHSEPSSLSLSHLGNHGLFPSHPSSSSGSGLQFSSSNFSGTSGPQLLFCPPSATPSAFYSAESDPRQSNNVQIFSSSSQVMMPHPLIHSINSTSSPLRRLPTSFSSKLLDSDNNDRSQRDTGSTRS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00962 366 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 330 IPR005333 GO:0003700
Lapu3g00962 366 MobiDBLite consensus disorder prediction 237 277 - -
Lapu3g00962 366 Pfam TCP family transcription factor 53 174 IPR017887 -
Lapu3g00962 366 ProSiteProfiles TCP domain profile. 53 111 IPR017887 -
Lapu3g00962 366 MobiDBLite consensus disorder prediction 352 366 - -
Lapu3g00962 366 MobiDBLite consensus disorder prediction 327 366 - -
Lapu3g00962 366 MobiDBLite consensus disorder prediction 1 35 - -
Lapu3g00962 366 MobiDBLite consensus disorder prediction 327 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00962 Lapu-Chr3 10415699 10416805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00962 37 212 TCP Transcription Factor Family AT5G60970 50.526 9.60e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lapu3g00962 TCP 7.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00962 - - pvu:PHAVU_003G183700g 613.609