Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00957 ATGAACGGATTAAGAAGTGAACGAGCTCCTCTCTTGGAATCCGAGCGTGGCGGAAGAGGAAAGAGGGATGGTGGCTCGGAAGGTCAAGTCTCAGACCTTGAACATGGTGACGCAGTGCCGGCGGAAAATGTGGGATTCTGTCGAGTGTTTTCACTTGCAAAACCTGAGGCTGGAAAGTTGGTGATCGGTACTGTGGCTCTTTTGGTTGCAGCCACATCTAGTATCTTAGTTCAAAAATTCGGTGGGAAGATAATTGACATCGTCTCTAGGGATATCCGGACTCCAGAGGAGAAAGATGAAGCTTTGGATGCTGTTAAGAGCACCATACTACAAATCTTTCTGATTGTTGTCTTTGGATCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCTTTCTTTGATGTTACTCGAACCGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCACTTATTGGTCTGAGCTTCATGTTTGCAACATCATGGAAGTTAACGTTATTGGCTTTGGCTGTTGTACCTGTTCTTTCTGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCCGCTGCACTAGCTTCATCAATTGCCGAGGAATCCTTTGGCGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTTTGAAATAATACGCTATTCAGAGAAAGTTGATGAAACACTTAATCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAATTTGACAATCAAGGGTTCTATGTCCTCTGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCCAAGTCAGGAAGTAAATGTCCTCTGGGTGATCAAGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAGTCATCCAGTGCTCAAGGGCATTACGTTGAAACTGCATCCAGGATCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCGAACTTAATTGAAAGATTTTACGACCCAACCAAGGGAAAAATTCTACTGAACGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCCTATGGATTTGATGGCAAAGTGGACGCTGTAGATTTAGAAAATGCTTCTAAAATGGCGAATGCACATGAATTTATATCAAAATTCCCAGACAAATACCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGAACCCAAAAATTCTCCTCTTGGATGAAGCTACCAGTGCCCTAGATGCTGAAAGTGAATACCTAGTGCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCATAGGCTATCAACTGTTAAAACTGCTAATACTGTTGCAGTTATATCTGACGGCCAAATAGTTGAGAGTGGCACCCATGATGAGCTTCTTAGCAAGAATGGTGTCTATACTGCATTAGTCAAGAGACAACTACAAACAACAACAAAAGTCGAAATCTAA 1899 0.425 MNGLRSERAPLLESERGGRGKRDGGSEGQVSDLEHGDAVPAENVGFCRVFSLAKPEAGKLVIGTVALLVAATSSILVQKFGGKIIDIVSRDIRTPEEKDEALDAVKSTILQIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTALIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAALASSIAEESFGAIRTVRSFAQEDFEIIRYSEKVDETLNLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGSMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKSGSKCPLGDQDGEVELDDVWFAYPSRPSHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDAVDLENASKMANAHEFISKFPDKYQTFVGERGVRLSGGQKQRIAIARALLMNPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTANTVAVISDGQIVESGTHDELLSKNGVYTALVKRQLQTTTKVEI* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00957 632 Gene3D - 383 627 IPR027417 -
Lapu3g00957 632 FunFam ABC transporter B family member 25 112 382 - -
Lapu3g00957 632 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524|GO:0016887
Lapu3g00957 632 CDD ABC_6TM_AtABCB27_like 63 359 - -
Lapu3g00957 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 622 IPR003439 GO:0005524
Lapu3g00957 632 MobiDBLite consensus disorder prediction 9 30 - -
Lapu3g00957 632 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Lapu3g00957 632 MobiDBLite consensus disorder prediction 1 34 - -
Lapu3g00957 632 SMART AAA_5 412 606 IPR003593 GO:0016887
Lapu3g00957 632 PIRSF ABC_prm/ATPase_B 15 631 - -
Lapu3g00957 632 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g00957 632 Gene3D ABC transporter type 1, transmembrane domain 111 382 IPR036640 GO:0005524|GO:0016020
Lapu3g00957 632 SUPERFAMILY ABC transporter transmembrane region 48 364 IPR036640 GO:0005524|GO:0016020
Lapu3g00957 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 623 IPR027417 -
Lapu3g00957 632 FunFam ABC transporter B family member 25 383 625 - -
Lapu3g00957 632 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu3g00957 632 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Lapu3g00957 632 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 45 626 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00957 Lapu-Chr3 10359917 10366752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00957 46 630 Calmodulin-binding Proteins AT2G36910 33.612 2.24e-92 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00957 - - var:108320153 1142.1