Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00954 ATGGAATCTTGGAGCTATGTCCCTGAAGAAAAGGAGTGTGTCTCCAATGAGGCACTATCCCCTCCCAACACTCTCGGGAGGACCAGAAATTCTTTCTTGGGCTGGGAACTCAAAACCCCATGTGCTTTTTCCAACGACATGTTGGGTTTGGGTCAGCACACCATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCTGAAATGTTGGGGAAACACTTGTCCGATGATCTAATTGCCAGTGTTTCAAGCAGAAAGGTGGATGCTGGTAGACAACAACAACATCAGCACCACCAACACAGTGACAGAATCACTGGCACTGTTGTGGATGCCCCAAGTGGCTTTTCTCAAAGAGGGGGCTCAAATTCCAAGCTTTCAAACTCAAGTTCCCTCATTGATTTGAAACTGGGTCGATTTGCTGACCATGGAGATGCCATTGATCCGGGGTTTTCCAAAGTTTTGTCTTCTTCCGAGTCATCAACGCCTCCTAAGAGAGTGAGAGCTTCCGGTGTTCACTCTCAGACTGCATATTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCGTGTAAAGATTACCACAAGAGGCACAAGGTGTGTGAGGTTCACTCCAAGACTGCCACTGTTATAGTCAATGGTATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGAAGCTGCCGTAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAGCCACAAATGGGGATTCACCCCGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGATAGCAGATTCCAGGGAACCATGCTAACATCATCCTTTATCCGCCCAGAGATGCTTCCTAGTGGGGTCATGTGTTCTGAGAAATATGGTATGAGTGGCTTCTGGAGACCTATCAAAGCAGAACACGGGGCTGGTTTTATGCATCTTTCTTCTATTCCTGTATCCAATGGACATCCTCAGTCAAGATCTTTATTTCCATCATATAATGGAAAACAATTTCCTTTTCTTCATGAAAATGGTGCGACATCCACCACAGGAAGCATCTTCTGTGAGAGCAATAGTCACTATCCACCTGCCCTCGGGGCACAAAATTCTGGGTTAAGACCACTATTCCAGGACACCATAGGAAATGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCAAGGATTATCGGGGATTTCAGACTCTTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCATCAGGAATTCCCTTGGCTCACTCTTTGGTTATTCCAAGCAGTCATGGCCATCACTACAACATGAGTCAGGTCTCTGAAAAGATAGGAATGAGCTCACAGACTTCTTCAAGCCGGGTGTCAGATAGTTTTCCTTCAGAACTAAATCATGCAGATGGAAGTAATCTCAGTCCTGTGTTAATATCAGACCATAATGATATTGTAAACTTTGATATGGCAGATGGTATATTCCAAGGTTCAGAATTCATGAATGTGAAGGATCGACTTTCCTGCGAAGATGGTGCAACCATCGACTTGCTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAATCCTTGCAGGTGAAGCAAGAGAATGATTCTTCTTGCACTCTGCGGATTACATGA 1665 0.4498 MESWSYVPEEKECVSNEALSPPNTLGRTRNSFLGWELKTPCAFSNDMLGLGQHTIENQGFEELGFPEMLGKHLSDDLIASVSSRKVDAGRQQQHQHHQHSDRITGTVVDAPSGFSQRGGSNSKLSNSSSLIDLKLGRFADHGDAIDPGFSKVLSSSESSTPPKRVRASGVHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRFQGTMLTSSFIRPEMLPSGVMCSEKYGMSGFWRPIKAEHGAGFMHLSSIPVSNGHPQSRSLFPSYNGKQFPFLHENGATSTTGSIFCESNSHYPPALGAQNSGLRPLFQDTIGNEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLAHSLVIPSSHGHHYNMSQVSEKIGMSSQTSSSRVSDSFPSELNHADGSNLSPVLISDHNDIVNFDMADGIFQGSEFMNVKDRLSCEDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00954 554 MobiDBLite consensus disorder prediction 109 125 - -
Lapu3g00954 554 MobiDBLite consensus disorder prediction 1 20 - -
Lapu3g00954 554 Pfam SBP domain 177 250 IPR004333 GO:0003677
Lapu3g00954 554 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 102 540 IPR044817 GO:0003677
Lapu3g00954 554 MobiDBLite consensus disorder prediction 89 103 - -
Lapu3g00954 554 FunFam Squamosa promoter-binding-like protein 14 168 238 - -
Lapu3g00954 554 SUPERFAMILY SBT domain 175 254 IPR036893 GO:0003677|GO:0005634
Lapu3g00954 554 Coils Coil 522 542 - -
Lapu3g00954 554 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
Lapu3g00954 554 MobiDBLite consensus disorder prediction 84 125 - -
Lapu3g00954 554 Gene3D - 167 238 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00954 Lapu-Chr3 10320932 10326454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00954 131 292 SBP-box Gene Family AT1G69170 56.790 1.91e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu3g00954 SBP 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00954 - - gmx:100817547 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00954 3 10320932 10326454 Lapu3g00954 3 10320932 10326454 ECH