Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00953 ATGGGAAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTCACATTTGCCAAGAGAAGGAATGGGTTGCTCAAGAAGGCCTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCAGCAGCACCTCAAGTATGATGAAAACACTGGAGAAGTACCAGAAGTACAGTTACAGTGCACTGGAGACAACCCGACCAATTAACGACATTCAGAACTACCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAGTCTTGCAACGTTCACAAAGGAACCTACTCGGGGAAGATCTTGCCCAAATGAATACAACTGATCTCGAGCAGCTTGAGAATCAACTAGAGGCAGCACTGAAGAACATTAGATCAACAAAGACTCAATTCATGCTTGACCAGCTTGCTGATCTTCACCACCGGGAAACATTGCTTGTTGAAACTAATAACGTGTTAAGGAGTAAGTTGGAAGAAACTAATAACTCACAAGTTCCAGTGAGTCTGGGTTTGGAAGCTGGAGGGCCTAACAACATCCATTACACAAACTTTCCTCCTCAATCAGAGGGGTTCTTCCAGGCAGTGGGAGTGAATCCCAGCTTGCAAATTGGATACAACCAGATTGGTCCTGACAATGCAAACGTTGGAGCTTCATCCTTGAGTATGCATGGATTTGCCTCTGGGTGGATGCTTTGA 735 0.449 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKYSYSALETTRPINDIQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTTDLEQLENQLEAALKNIRSTKTQFMLDQLADLHHRETLLVETNNVLRSKLEETNNSQVPVSLGLEAGGPNNIHYTNFPPQSEGFFQAVGVNPSLQIGYNQIGPDNANVGASSLSMHGFASGWML* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00953 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu3g00953 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu3g00953 244 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu3g00953 244 Coils Coil 116 143 - -
Lapu3g00953 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lapu3g00953 244 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lapu3g00953 244 FunFam MADS-box transcription factor 1 13 88 - -
Lapu3g00953 244 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lapu3g00953 244 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu3g00953 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Lapu3g00953 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu3g00953 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu3g00953 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu3g00953 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu3g00953 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00953 Lapu-Chr3 10286694 10291882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00953 1 217 MADS-box Gene Family AT5G15800 61.538 1.63e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu3g00953 K-box 4.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00953 K09264 - gmx:100797819 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01237 1 25232831 25240886 Lapu3g00953 3 10286694 10291882 ECH
Lapu3g00953 3 10286694 10291882 Lapu3g00953 3 10286694 10291882 ECH