Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00952 ATGGGGAGAGGAAAAGTGGAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTCACGTTCTCAAAGAGAAGGTCTGGTTTGCTGAAGAAAGCCCGCGAGATCTCTGTGCTTTGCGATGCTGATGTGGCTGTCATAGTCTTCTCCACCAAAGGCAAACTTTTGGACTACTCCACCCAACCTTCTATGGAAAGAATTCTTGAACGGTATGAGAGAACTACATATGCAGAGAGACAAGACCGTGCAGGTGATCAAGCAACAAATCAAAACTGGGTTATAGAACACGAAAACCTCAATGCCAGGGTGGAGGAACTACAACGATTTCAAAGGAATTTTATGGGAGAAGAGCTTGAAAGCTTAAATCTCAGAAGGCTTCATAGTTTGGAACAACAACTTGCTTCCGCACTCAAACACATTAGATCACGAAAGAACCAAGCCATGCATGAATATATTTCTGAGCTTCAGAAAAAGGATAAGGCACTCCGGGAACATAACAACTGGCTCGCCAAGAAGATTAAAGAAAAGGAGAAGGCACTGGCCCCTCAAGAGCAGGAGGGGTTGCAAAATAACATGGATGCGATTTCTGTCATTGTAACTAAGCCATTGGAGTCCCTGAATATTGGAGGCTCCCCAGAAGCCAAATGTAATGAAGGAACTTCAACGTCAACTCGACCTAAAATCCTACTCCCTCCTTGGATGACTAGTCCTACAGATAAATAG 720 0.4403 MGRGKVELKRIENKINRQVTFSKRRSGLLKKAREISVLCDADVAVIVFSTKGKLLDYSTQPSMERILERYERTTYAERQDRAGDQATNQNWVIEHENLNARVEELQRFQRNFMGEELESLNLRRLHSLEQQLASALKHIRSRKNQAMHEYISELQKKDKALREHNNWLAKKIKEKEKALAPQEQEGLQNNMDAISVIVTKPLESLNIGGSPEAKCNEGTSTSTRPKILLPPWMTSPTDK* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00952 239 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lapu3g00952 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Lapu3g00952 239 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu3g00952 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu3g00952 239 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Lapu3g00952 239 MobiDBLite consensus disorder prediction 207 239 - -
Lapu3g00952 239 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu3g00952 239 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lapu3g00952 239 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Lapu3g00952 239 MobiDBLite consensus disorder prediction 213 228 - -
Lapu3g00952 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Lapu3g00952 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu3g00952 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu3g00952 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu3g00952 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu3g00952 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00952 Lapu-Chr3 10268424 10283568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00952 1 209 MADS-box Gene Family AT1G26310 54.018 1.28e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu3g00952 K-box 1.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00952 K09264 K09260 gmx:100805348 360.533