Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00945 ATGACTGCCAACGGAGGGAGTTGTCTGAAGACCCATGATTTCCTGCAGCCACTGGAGCGACTAGAGACGAAGGGGAGTGCGAAGGAAGAAGCGACGGATGAAATATCGTGGGTGGTTGAGAAGGCAGGACCTTCCGTTGAGCATCTCTTACCTGGAGGAATTGGGACTTACAGCATTAACCACATTTCATATGTTAATAATAACAGTAACAATAATAATCAAAGGGTTCCCAAAGCAGAGACGTCCCTTTTCGTGCGACAAGCAACTAGTACGGACAGGAACGATGAGAACTCCAACTGCAGTTCGTATACTACTTCCAGCGGTTTCACTTTGTGGGAAGACTCATCCGGGAAGAGGGGCAAAACAGGAAAGGAGAATAATTCGGGCGACAAACCCTCTCTTGGAGAATGTGCGGCCACAAAGCTAGGGCAGTGGACATCAACGGAGCGGACCTCACAGTCGTTTAGTACCAATCGTCACGACAGCTTCAGCTCTCGCTCTCCATCTCAGACAACTGGGCAGAAGAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAGGGATAGTGCCCAGGATGAAGTGCTAGAAAACGAAGAAACATTTTTTCTCAAGAAAGAACCTTCCAATGCCCAAAGAGAACTGAGGGTGAAAGTGGATGGTATGAGTACCGATCAAAAACCCAACACACCAAGATCAAAACACTCCGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTAGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCGTTTCAAGGGTGGAGTAACGAGCCGGATAAATTGATGCCATGGCAGAGAAATAACGACAAGCCAGCAGAAAACTTTCAACATCGTGGCACCGATAATGGGCCAAGTCCATCTCCAACACTGCTTTTTGCTTCAAAGAATGAGGAGAAAAGTATTAGCATTTCCCCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGTACAGCAACTACCTCCAAGACAATGGACCATCAGGCTGGATTAATTAACAAGGTCTTTCCGATTCCTATTTCCTCGCACCTAAATTTCTTCTCTCCAGCCCAAATGGGTGGTCCAGGGGGATTAGTATCTCCGCTCGCACATAGACCGGGTGCTGAGGCTGAAAACAAATATCAACCTTCAGTGGAGTGTCAGACCATGGCTGCTACCAATGAAAAGCTGAAAGAGAAAGAGCTCACGATTGAAGGTGGTGCAATTAGCATATCAAGTGTGTACTCAAAAGGGTTGTTGCATACGCTTACACATGCACTGCAAAGTTCAGGGGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGACCAACTGTACCAGTGTCAGTGTGTGGTTCTAAGGATGGTGAAGTACCTTCTAACAACCAAAAGATGTTGCGCTCGAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAATTAAGAAGCTAAAGATCTGCAAAAGTTAA 1596 0.453 MTANGGSCLKTHDFLQPLERLETKGSAKEEATDEISWVVEKAGPSVEHLLPGGIGTYSINHISYVNNNSNNNNQRVPKAETSLFVRQATSTDRNDENSNCSSYTTSSGFTLWEDSSGKRGKTGKENNSGDKPSLGECAATKLGQWTSTERTSQSFSTNRHDSFSSRSPSQTTGQKNQSFIEMMKSARDSAQDEVLENEETFFLKKEPSNAQRELRVKVDGMSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEPDKLMPWQRNNDKPAENFQHRGTDNGPSPSPTLLFASKNEEKSISISPTIPGSTQNVESGLSTATTSKTMDHQAGLINKVFPIPISSHLNFFSPAQMGGPGGLVSPLAHRPGAEAENKYQPSVECQTMAATNEKLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRPTVPVSVCGSKDGEVPSNNQKMLRSRVASSGKSDQAIKKLKICKS* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00945 531 MobiDBLite consensus disorder prediction 200 220 - -
Lapu3g00945 531 MobiDBLite consensus disorder prediction 305 330 - -
Lapu3g00945 531 CDD bHLH_AtBIM_like 228 304 - -
Lapu3g00945 531 Pfam Helix-loop-helix DNA-binding domain 231 280 IPR011598 GO:0046983
Lapu3g00945 531 FunFam BHLH domain class transcription factor 227 299 - -
Lapu3g00945 531 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 9 528 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lapu3g00945 531 Gene3D - 227 300 IPR036638 GO:0046983
Lapu3g00945 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
Lapu3g00945 531 MobiDBLite consensus disorder prediction 140 176 - -
Lapu3g00945 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 300 IPR036638 GO:0046983
Lapu3g00945 531 SMART finulus 235 285 IPR011598 GO:0046983
Lapu3g00945 531 MobiDBLite consensus disorder prediction 200 244 - -
Lapu3g00945 531 MobiDBLite consensus disorder prediction 111 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00945 Lapu-Chr3 10187281 10194579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00945 6 483 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 45.181 1.39e-107 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g00945 HLH 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00945 - - gmx:100808016 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00945 3 10187281 10194579 Lapu3g00945 3 10187281 10194579 ECH