Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00944 ATGGGGTCGTCGTCGGTGTCGTTGGGTTCTCCAAAGAAGAGAGTGAGATCCCAAGTAGAGGAGGATGAGGACGAAGAGAGCGTTTGTTGCGGGATTTGCTACGCGGGGCGAGGGGTTTCAATCGCAGGGGAAATCGATTGCTGCAGCCACTACTTTTGCTTCGTCTGCATCATGGAATGGGCCAAGCACGAGTCACGATGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCTATGCACGGTGTCTTTTCTTCCTCTCGGGACGTTAAGGTCCCTCATCGTGACCAGGCTTATCATCCTCATGGAAATGTGGTGATTGGTCCGGGCGATTTTTATGCTGAAACCAAATGTGGTGTTTGTCGTGCCGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATACTGCTTCACACACATACTGTGTTGGCCTGGGATGTACTGTTCCTGAAGGTGATTGGTTTTGTAATGATTGTGCTATTTCACGGGAGACCCATGGCAGTGAAGAATCAGACCAACAAAATGTTGTGCCAGAGGCTGAGCCTAGTGAAACCGTTGATATCTTTGATATTGTGAGGGAAACAGGCAGTCGGGTGCTTAAAAGACCAAGAACATCTCATTTACAACAGAACCTTTCATCTCCTTCTGCTATTCCTTTATCAGATAGGTTAAGTAGATTCAAAGGAAAAAGTCCTGCTACAGGTGTCCATCGTATGCAGCGTAATATACAGGCATTTCGTGAAAACTGGAATGCTTTGAGGGGTGGTTCATTACAGTTCCATTGTAATGAGGATCAACCTAGCAGCACAGTTAGTCAAAAGCAAGATTCTAGATCCTTATCACATGGCAAATTATATGATTCGCATTCTAGGGCTTCCACAAGCCTGCAACATTCCACTGTCCAAGGTGGTCCTACTAACAAAACGTTGAATGATAGAGTCCTTAAAGATGATGCTGACAAGGCTTGGAAAATGGTGGACAGGGCAAAGAGGTTGCAACTAACTCATCAAAAAACTGGTGGCAATCCGCAGGGAGTAGATAGACCATCAAGCAGTGGAGGAGCTCGTAAAACATCAATTGAACATTGTAATTTCTCGGAACTGAAAGATCAACATTTCAAAGAATTAGACCTAAGGAACACTAAGAAAGAGAAGCAGTGTGACTATTCTAGGCTCGTCCAGAATTTCAAAAGTTGCTCAACTCTGAAGTTGGAAGAGAAAAAGCAAAGCAGGGTTAGATGTGAGGAGATGATACACAGTGTAAGGGACCACACTACTCATTCAGAAGCATATTGTGAAAGTCCATTGTCCAGAAAGGTCCCTACTAATAGCCAGGGTGGTGTTCCCTGTTGTGAAGAAGATACAAATGCTTGCCGGGTAACTTCGGCAGATTTAGCTTCCTCACGTGGCAAGTTTGTTAGTGTGCTCTCCTCTTGTAGGGACGTTGATATTGTCAATGAAGAAAAGAGATTAGCTGGAAGTTGCGAGGATGGAGGCACAAGAAAAACTGACGATGCAAAAACTGAAATCCAGTCTCTTGTTAAATTGAATCTGAAGCTCTTAACCAGAGATAAAAAATTAGGTTTTGATACCTTCAAGGCAGTTGCAAGGCAGGCCACCCATACCATCTTGGCTGCTTGCAGTTCTGAGCAGCAAAATTGTAGTGCATCCTCCTCTTGCTCAGTATGCAGTCATTCCGACAATACTCCTCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGCAGACAATGCTTTTACGCCTTTGTTAACAATGTTGTCAGTTCCACCATCATGGAGAAAGTGGGTTGCGCTTGA 1830 0.4448 MGSSSVSLGSPKKRVRSQVEEDEDEESVCCGICYAGRGVSIAGEIDCCSHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQAYHPHGNVVIGPGDFYAETKCGVCRAGTDEHLLLLCDLCDTASHTYCVGLGCTVPEGDWFCNDCAISRETHGSEESDQQNVVPEAEPSETVDIFDIVRETGSRVLKRPRTSHLQQNLSSPSAIPLSDRLSRFKGKSPATGVHRMQRNIQAFRENWNALRGGSLQFHCNEDQPSSTVSQKQDSRSLSHGKLYDSHSRASTSLQHSTVQGGPTNKTLNDRVLKDDADKAWKMVDRAKRLQLTHQKTGGNPQGVDRPSSSGGARKTSIEHCNFSELKDQHFKELDLRNTKKEKQCDYSRLVQNFKSCSTLKLEEKKQSRVRCEEMIHSVRDHTTHSEAYCESPLSRKVPTNSQGGVPCCEEDTNACRVTSADLASSRGKFVSVLSSCRDVDIVNEEKRLAGSCEDGGTRKTDDAKTEIQSLVKLNLKLLTRDKKLGFDTFKAVARQATHTILAACSSEQQNCSASSSCSVCSHSDNTPQFQKSTLMPNCCRQCFYAFVNNVVSSTIMEKVGCA* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00944 609 MobiDBLite consensus disorder prediction 263 319 - -
Lapu3g00944 609 SUPERFAMILY FYVE/PHD zinc finger 115 165 IPR011011 -
Lapu3g00944 609 MobiDBLite consensus disorder prediction 265 283 - -
Lapu3g00944 609 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Lapu3g00944 609 ProSiteProfiles Zinc finger PHD-type profile. 117 166 IPR019787 -
Lapu3g00944 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 187 IPR013083 -
Lapu3g00944 609 PANTHER F18C1.6 PROTEIN 16 606 - -
Lapu3g00944 609 Pfam PHD-finger 120 164 IPR019787 -
Lapu3g00944 609 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Lapu3g00944 609 SMART ring_2 30 70 IPR001841 -
Lapu3g00944 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 80 IPR013083 -
Lapu3g00944 609 MobiDBLite consensus disorder prediction 339 361 - -
Lapu3g00944 609 MobiDBLite consensus disorder prediction 206 224 - -
Lapu3g00944 609 SMART PHD_3 119 164 IPR001965 -
Lapu3g00944 609 MobiDBLite consensus disorder prediction 336 361 - -
Lapu3g00944 609 MobiDBLite consensus disorder prediction 290 313 - -
Lapu3g00944 609 SUPERFAMILY RING/U-box 15 78 - -
Lapu3g00944 609 MobiDBLite consensus disorder prediction 206 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00944 Lapu-Chr3 10170829 10177861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00944 111 167 C2H2 Transcription Factor Family AT3G01460 37.931 2.04e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu3g00944 PHD 5.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00944 - - gmx:100808541 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00944 3 10170829 10177861 Lapu3g00944 3 10170829 10177861 ECH