Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00943 ATGGCAGATGTAACCACCTACCTCCGCCACCACCGCCACCACCGCCACCCCGACGATGACCAAACCCTAATTCCTTTCCCTTACTGGGACTTAGACTTCGATTTCGACCCCGAATTCCACCCCAACCCTTTCTCCCTCACCGACCGCGAAAACCAGGTCAATTTTGTCATGGATCTCTTTCACCAGCGCGTGGAACAGTCGCAAATCACCGATCCCCTCTCTAACGACGCCTTTTTGGGCGTCATCGACGCCCTTGATGCAATCGACCTTGGCTTCCCCGCCGCCGACGACTTCTTCGTCGGACGGCGGCTCTCCGTCGGATCTGGCTCCGACGAATCGCTATACCACTCCGGAAACGTCGGTAGCATGCTCGAGATCTGCGCGCACTCGGAGGAAGATTACAACGAGAACGGCGACGTTTCGAGCATCCCTCTCTGCTTGGACGCGCTTCAATTGGAAGACAACAGAGACACTTACGAGGATTTCGAGTGGGAGGAAGTGGTTGACGAGAGAGAAGTACTGAGCATGCTCGACGACACCTCCGTTTCCGTCTCCGTCGGAATTGAAGAGGAAACAGAAGAGGAAGTAGAATTTGAATCGGAGGCCAACAATTTGGGGTGGCAGGTTCTATTGAACGGCAATTTGGAAGGAACGAATTCCGAGCCTTACTTCGGGGACAACGAGGATTTCGTGTACGCTGCGGAGTACGAGATGTTCGGTCAATTCAACGAGGACGCCTTCGCCGGGAAGCCTCCGGCGTCCGTCTCCGTCGTGAGGAACCTTCCGGCGGTGGTCGTTAGCGCCGCTGACGTGGCAAATGAAAACGTGGTTTGCGCTGTCTGTAAGGAGGAGTTTGGCGTTGGGGAAGGGGTGAAGCAGTTGCCGTGCTCGCATCGTTTCCATGGGGACTGCATTGTGCCGTGGTTGGGGATACGGAACACGTGCCCCGTCTGTCGGTATGAGTTTCCCACTGATGATCCTGATTATGAGCGGAGGAAGGCACATAGATCTGTTATGTGA 1020 0.5539 MADVTTYLRHHRHHRHPDDDQTLIPFPYWDLDFDFDPEFHPNPFSLTDRENQVNFVMDLFHQRVEQSQITDPLSNDAFLGVIDALDAIDLGFPAADDFFVGRRLSVGSGSDESLYHSGNVGSMLEICAHSEEDYNENGDVSSIPLCLDALQLEDNRDTYEDFEWEEVVDEREVLSMLDDTSVSVSVGIEEETEEEVEFESEANNLGWQVLLNGNLEGTNSEPYFGDNEDFVYAAEYEMFGQFNEDAFAGKPPASVSVVRNLPAVVVSAADVANENVVCAVCKEEFGVGEGVKQLPCSHRFHGDCIVPWLGIRNTCPVCRYEFPTDDPDYERRKAHRSVM* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00943 339 ProSiteProfiles Zinc finger RING-type profile. 278 319 IPR001841 -
Lapu3g00943 339 Pfam Ring finger domain 278 319 IPR001841 -
Lapu3g00943 339 PANTHER SI:CH211-59O9.10 41 323 - -
Lapu3g00943 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 325 IPR013083 -
Lapu3g00943 339 CDD RING-H2_RNF126-like 278 319 - -
Lapu3g00943 339 FunFam E3 ubiquitin-protein ligase RING1-like 240 325 - -
Lapu3g00943 339 SMART ring_2 278 318 IPR001841 -
Lapu3g00943 339 SUPERFAMILY RING/U-box 259 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00943 Lapu-Chr3 10159950 10161318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00943 142 325 C3H Transcription Factor Family AT5G60820 49.038 7.52e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00943 - - gmx:100794303 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00943 3 10159950 10161318 Lapu3g00943 3 10159950 10161318 ECH