Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00931 ATGGAAAACATAGACACCTCAAAACTTTCACACCAATCTCAAAACCAAATCAAGAATCTTCCCTTGATGCCTATTGAAATAGACAAATCCTATGAGAAGAGAGTCATGAAGATTCCAAAAGTAGGAAACAAGATTGAGAAAAAGTTTCTTGGGGTGAGACAAAGACCTTCAGGAAGATGGATTGCCGAGATCAAGGACTCCTCGAAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCCTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGAAGAAATGCCAAAACAAACTTTCCAAACCCTGGAATCATGAACACTCATGAAGAAGACTGCATCATTTTGGGCAAGAATCCAAGGTCTTACCAACTTCTTAAGCATGTAGTTATGAAGAACCGTGCACTTTCATCATCTCTTTATTCCACATTCATGCCTTGGAAAAACCAGATCATGATGCGAAATGAACATGACACCCTTGTTGAAGAAACTATAGTTTGTTCCATTCCTGAACAAGGCTTTGGCTGTTGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGCTTCTTCTCAAGATTGA 621 0.3961 MENIDTSKLSHQSQNQIKNLPLMPIEIDKSYEKRVMKIPKVGNKIEKKFLGVRQRPSGRWIAEIKDSSKKLRLWLGTFDKAEEAALAYDCAARLLRGRNAKTNFPNPGIMNTHEEDCIILGKNPRSYQLLKHVVMKNRALSSSLYSTFMPWKNQIMMRNEHDTLVEETIVCSIPEQGFGCCGISFGSSKVYSSVVVAPSFSASSQD* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00931 206 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Lapu3g00931 206 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Lapu3g00931 206 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Lapu3g00931 206 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Lapu3g00931 206 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Lapu3g00931 206 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Lapu3g00931 206 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Lapu3g00931 206 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Lapu3g00931 206 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 126 - -
Lapu3g00931 206 CDD AP2 47 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00931 Lapu-Chr3 10039409 10040285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00931 42 106 AP2-EREBP Transcription Factor Family AT5G19790 69.231 8.62e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu3g00931 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00931 - K09286 pvu:PHAVU_003G180000g 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00931 3 10039409 10040285 Lapu3g00931 3 10039409 10040285 ECH