Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00916 ATGGGTGTGGACTACTACAAGATTTTGCTGGTTGACAAGAATGCCACTGATGAAGATTTGAAGAAAGCTTACAGAAAGCTTGCCATGAAATGGCACCCCGACAAGAATGCAACCAACAAAAAAGAGGCTGAGACTAAGTTCAAGCAGATTTCTGAAGCCTACGAGGTTTTGAGTGATCCCCAAAAGAGAGCAATTTATGATCAGTACGGAGAAGAAGGGCTTAAAGGGCAAGTGCCACCTCCAGATGCTGGTGGGCCGACGTTCTTCCAAACTGGGGATGGTCCAACAGCATTCAGGTTCAATCCAAGAAACGCAAATGACATTTTTGCTGAGTTTTTCGGGTTTTCAAGCCCAAGCCCATTTGGTGGTGGTGGCATGAGGGGTGGTTCCTTCGGTGCAGTTTTTGGCGATGATATATTTGGTTCATTTGGAGAAAGAAGGCCAATGAATCAGGGTCCGCGCAAGGCACCTCCTATAGAGAAGAGGTTGCCCTGCACCCTTGAAGAGCTCTATAAGGGCACTACCAAAAAAATGAAGATCTCAAGGGAGATTGCTGATGCAAGTGGGAAGACTTTACCGGTGGAGGAAATATTGACCTTGGAAATTAAACCAGGGTGGAAGAAGGGGACAAAGATCACATTCACAGAGAAAGGAAACGAGCAGCCAAATGTGATTGCTTCGGATCTTGTGTTTGTTATTGATGAGAAACCTCACCCAGTGTTTACTAGAGATGGTAACGATTTGGTTGTGACACAAAAAGTGTCACTTGCAGAAGCTCTAACGGGTTACACTGTCCATCTTACAACTCTAGATGGGAGGGTTCTAAACATTACCATTAACAATGTGATTCATCCAAACTATGAAGAGGTGGTTCCCAGGGAAGGGATGCCAATTTCAAAAGATCCTTCAAAGAGGGGTAATCTTAGAATCAAATTCGACATCAAATTCCCAGCAAAGTTGACATCAGAGCAGAAGGCAGGAATAAAGAAGCTGCTGCCACATTGA 1005 0.4458 MGVDYYKILLVDKNATDEDLKKAYRKLAMKWHPDKNATNKKEAETKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGPTFFQTGDGPTAFRFNPRNANDIFAEFFGFSSPSPFGGGGMRGGSFGAVFGDDIFGSFGERRPMNQGPRKAPPIEKRLPCTLEELYKGTTKKMKISREIADASGKTLPVEEILTLEIKPGWKKGTKITFTEKGNEQPNVIASDLVFVIDEKPHPVFTRDGNDLVVTQKVSLAEALTGYTVHLTTLDGRVLNITINNVIHPNYEEVVPREGMPISKDPSKRGNLRIKFDIKFPAKLTSEQKAGIKKLLPH* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00916 334 SMART dnaj_3 3 62 IPR001623 -
Lapu3g00916 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 153 248 IPR008971 GO:0006457|GO:0051082
Lapu3g00916 334 CDD DnaJ 4 59 IPR001623 -
Lapu3g00916 334 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lapu3g00916 334 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lapu3g00916 334 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lapu3g00916 334 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lapu3g00916 334 FunFam DnaJ subfamily B member 13 3 125 - -
Lapu3g00916 334 Gene3D - 158 236 - -
Lapu3g00916 334 Pfam DnaJ C terminal domain 159 317 IPR002939 -
Lapu3g00916 334 Gene3D DnaJ domain 3 123 IPR036869 -
Lapu3g00916 334 Gene3D - 238 318 - -
Lapu3g00916 334 CDD DnaJ_C 157 320 - -
Lapu3g00916 334 Pfam DnaJ domain 4 67 IPR001623 -
Lapu3g00916 334 FunFam Dnaj homolog subfamily b member 155 236 - -
Lapu3g00916 334 SUPERFAMILY Chaperone J-domain 3 126 IPR036869 -
Lapu3g00916 334 SUPERFAMILY HSP40/DnaJ peptide-binding domain 240 326 IPR008971 GO:0006457|GO:0051082
Lapu3g00916 334 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lapu3g00916 334 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lapu3g00916 334 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 333 - -
Lapu3g00916 334 FunFam DnaJ subfamily B member 13 238 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00916 Lapu-Chr3 9916698 9918942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00916 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 7.58e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00916 K09510 - gmx:100775897 576.63