Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00908 ATGTATTCCTCAAATACCTCCCTCAACGGCAATGACCTACTCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACCAATTCTTCAAAAGACCAATCCAATTCCAATTACGCCCTTCCTCCTCCTCTTCCTCCTCCTTTGTCCTTTCTCCAATCCTTTGACGAAAATATCTTTCTCGAACACCACCATGACTTGCTCTTACTTCACCAGTCTCTAGCTGACCCCGGACTCTCCAAAAACCTTGACGCTGCGCCTGAAATCCCGGCAATTCGTTGTGTTGGACAAAGTGGCGCCACCGCTATGGAGACCAATACAAGGAAGAGATCCAGCAAGAGAGATCGCCACAGCAAGATCAACACCGCACGAGGCCTCAGAGACCGAAGAATGAGGTTGTCCCTCGAAGTTGCAAAGAGGTTCTTCGGGTTGCAAGACATGTTAGGCTTTGACAAGGCCAGCAAAACAGTTGACTGGCTACTAAACCAAGCAAAAGTAGAAATCAAACAACTTGCACGGGAAAAAAACAGCGTTGGTGGTTCCAAGAGTGCATCATCAACTTCTGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGTAGTGAGTGGAGTTCACGAGGAGCAAGAGAGGGAGACACCCAACATGAAAAGAAAAACAAGTAAGGTTTGTAGAAAGAGTGCATTCAATACTATAGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCAAGAGAAAGAACAAGAGAGAAGATGAGGACTCGGAGAGTACTTGCTGCAGATGCTTCAAACCTTAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTCAGAGCCAAAGCGTGAATCACCCCTCCTTGGATGTGCACCTTCCTGAGGCTGAAGAATTAAGTTCTCACGCGAAGGAACATTTGGGAACCGTGGAGGACATAGCGCGGCGAGAAGATAATTCTTTGGTGATCATGAACAAGTGGAGCCCAACCATGATATTCAATTCTCTCAACAACTCAGCAATCCTTCACGAACATCAATTTGCAGAATTTCAGTCCTTGGGAAAACCTTGGGAAGCCTACAACGATCACATCTAG 1119 0.4656 MYSSNTSLNGNDLLSYPNQPFCFRPFSFESNPTNSSKDQSNSNYALPPPLPPPLSFLQSFDENIFLEHHHDLLLLHQSLADPGLSKNLDAAPEIPAIRCVGQSGATAMETNTRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKQLAREKNSVGGSKSASSTSECEGVSSLDEVVVSGVHEEQERETPNMKRKTSKVCRKSAFNTIDKESREKARERARERTREKMRTRRVLAADASNLNRLSSWNPFETVEDSAGTQSQSVNHPSLDVHLPEAEELSSHAKEHLGTVEDIARREDNSLVIMNKWSPTMIFNSLNNSAILHEHQFAEFQSLGKPWEAYNDHI* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00908 372 MobiDBLite consensus disorder prediction 181 198 - -
Lapu3g00908 372 MobiDBLite consensus disorder prediction 232 258 - -
Lapu3g00908 372 Pfam TCP family transcription factor 117 258 IPR017887 -
Lapu3g00908 372 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 99 369 IPR005333 GO:0003700
Lapu3g00908 372 ProSiteProfiles R domain profile. 238 255 IPR017888 -
Lapu3g00908 372 MobiDBLite consensus disorder prediction 207 223 - -
Lapu3g00908 372 ProSiteProfiles TCP domain profile. 118 176 IPR017887 -
Lapu3g00908 372 MobiDBLite consensus disorder prediction 179 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00908 Lapu-Chr3 9823094 9825331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00908 56 187 TCP Transcription Factor Family AT1G68800 46.479 1.85e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lapu3g00908 TCP 4.8e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00908 - - vra:106767828 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01177 1 24740860 24742870 Lapu3g00908 3 9823094 9825331 ECH
Lapu3g00908 3 9823094 9825331 Lapu3g00908 3 9823094 9825331 ECH