Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00906 ATGAGCTGGCGCAGGGTGTTGAACTCAGCTCAGGCCCTGGCTGCACACACCTTCCTCTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTCAATCACAATCTCTCTTGTTCTTGGTGGGTAATATTTTTACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCACCATCTGCTCCACGTAATCGAAATTGGGCACCGTGTCATGCCGTCGTTGCAACGCCATTGATTATTGCATTTGAATTGCTCCTTTGTATATATCTTGAGAGCTTATATGATCTTGGCTATGCAGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTAATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGACGAGGCAATATGGGAAACTCTTCCTCACTTCTGGGTTGCAATTTCAATGGTGTTCTTCATTGCTGCCACAGTCTTCACACTCCTAAAACTGAGCGGTGATGTAGGTGCTCTGGGCTGGTGGGACCTGTTTATTAATTTTGCTATCGCCGAATGCTTTTCTTTCCTTGTATGTACAAAGTGGTCCAATCCAGTAATTCATAGAAATTCAAGAGAAGCCAGTAGTTCATCTTCAACTGCTATTAGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACAGATGAAAATCGACTCCAGGGGAGAATTTGTAGTCTGCAAGACATAGGGGGGCATTTCATGAAAGTACCGATTATTGTATTCCAGGTTCTTCTCTGTATGCATCTAGAGGGAACACCTGCTTGTGCTGTATATATACCACTTCCAGTTCTTTTCTCTCCCCTTTTCATTCTTCAAGGAGCTGGAGTACTGTTATCTGCATCTAAATTAGCAGAGAAACTTGTGCTTCTCCTACGAAGTGGAGCTGGTGGAGGAATTTATTTTAGATTTTCTTCAAGAGTTCATGATTGCTTGGGGTTCTTGCATCATGGTTCCAGATTATTAGGTTGGTGGTCAATTGACGAAGGGAGTCGGGAAGAACAAGCACGACTATACCATGAGGGAGCATCTGGGTATAATACGTTTTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCGAAAAAGGAACTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTTGGTGAACAGACTGAAATTACAAAATTCAGCCAACAGGAGTACGAAAGACTTCAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAACGTTGTATTGCTCCCATGTAGGCATCGCGTCCTTTGCAGCATTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCTATTGCTGAGCGTCTGCCTGTATATGATGTTTAG 1401 0.429 MSWRRVLNSAQALAAHTFLLCFTLFLVLKLNHNLSCSWWVIFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLIIAFELLLCIYLESLYDLGYAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFSFLVCTKWSNPVIHRNSREASSSSSTAIRYLDWNSGLVVSTDENRLQGRICSLQDIGGHFMKVPIIVFQVLLCMHLEGTPACAVYIPLPVLFSPLFILQGAGVLLSASKLAEKLVLLLRSGAGGGIYFRFSSRVHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFCGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEYERLQNEKVLCRICFEGEINVVLLPCRHRVLCSICSEKCKKCPICRDSIAERLPVYDV* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00906 466 ProSiteProfiles Zinc finger RING-type profile. 419 454 IPR001841 -
Lapu3g00906 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 464 IPR013083 -
Lapu3g00906 466 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 466 - -
Lapu3g00906 466 SMART ring_2 419 453 IPR001841 -
Lapu3g00906 466 SUPERFAMILY RING/U-box 410 461 - -
Lapu3g00906 466 FunFam Kinesin-like protein KIN-7D, mitochondrial 396 464 - -
Lapu3g00906 466 Pfam Zinc finger, C3HC4 type (RING finger) 416 458 - -
Lapu3g00906 466 Pfam Transmembrane Fragile-X-F protein 28 291 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00906 Lapu-Chr3 9786415 9794624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00906 1 466 C3H Transcription Factor Family AT1G73950 72.747 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00906 - - gmx:100791390 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00906 3 9786415 9794624 Lapu3g00906 3 9786415 9794624 ECH