Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00904 ATGTCATCGAGTGGAACCCTTTGGAGCTACGAAGAAGAAAAAGCATTTGAGAATGCCATAGCTATGCATTGGATTGAGGAAGCCTCAAAAGAACAATGGGAGAAAATTGCTTCAGCAGTTCCCAGCAAAAGCATGGAAGAAGTGAAGCAGCATTACCGGGTTCTAGTAGAGGATGTAAGTGCAATAGAGGCAGGTCACATACCATTCCCTAACTATGCTTCTGAAGAAACAACATCTTCAAATAAGGACTTTCATGGCTCTTCCAAGGCCACAAGTTCAGAAAAAAGATCAAATTGTAATTATGGAAGTGGTTTTTCTGGATTAGGACATGACTCCACCACTCACAGTAGTGGTAAAGGAGGCTTGTCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACCGAGGAGGAGCACAGGTTATTTTTACTTGGTCTGGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATATCTAGGACTCCCACACAAGTGGCAAGCCATGCACAGAAGTACTTCATAAGGTTGAATTCTATGAATAGGGACAGGAGAAGGTCTAGTATCCATGATATAACCAGTGTGAACAATGGAGATGTGGCTAGTAATCAGGCACCAATTACAGGGCAGCATAGTAGCACAGTTTCTTCAAGTACAATGGCTGTAGGACAATCACTGAAGCATAGAGTCCAGGGTCACATACCACCTGGTTTAGGCATGTATGGAACACCAGTTGGCCATCCTGTGGCTGCTCCTCCAGGGCATATGGCATCTGCAGTTGGTACTCCTGTCATGCTTCCTCCTGGACCCCACCCTCATTCCCATCCCCATCCCCATCCCCATGCTCATCCTCATCCTCATCCTCATCCACCTTATGTTCTTCCTCTTGCTTACCCAATGGCCCCTCCAACAATGCATCAATAA 942 0.4512 MSSSGTLWSYEEEKAFENAIAMHWIEEASKEQWEKIASAVPSKSMEEVKQHYRVLVEDVSAIEAGHIPFPNYASEETTSSNKDFHGSSKATSSEKRSNCNYGSGFSGLGHDSTTHSSGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNQAPITGQHSSTVSSSTMAVGQSLKHRVQGHIPPGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHSHPHPHPHAHPHPHPHPPYVLPLAYPMAPPTMHQ* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00904 313 MobiDBLite consensus disorder prediction 200 220 - -
Lapu3g00904 313 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Lapu3g00904 313 PANTHER TRANSCRIPTION FACTOR KUA1 4 307 - -
Lapu3g00904 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
Lapu3g00904 313 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Lapu3g00904 313 Gene3D - 134 186 - -
Lapu3g00904 313 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Lapu3g00904 313 ProSiteProfiles SANT domain profile. 1 60 IPR017884 -
Lapu3g00904 313 SMART sant 132 182 IPR001005 -
Lapu3g00904 313 SMART sant 4 58 IPR001005 -
Lapu3g00904 313 FunFam Transcription factor SRM1 1 69 - -
Lapu3g00904 313 CDD SANT 8 56 IPR001005 -
Lapu3g00904 313 Gene3D - 1 69 - -
Lapu3g00904 313 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Lapu3g00904 313 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Lapu3g00904 313 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Lapu3g00904 313 MobiDBLite consensus disorder prediction 270 297 - -
Lapu3g00904 313 MobiDBLite consensus disorder prediction 72 134 - -
Lapu3g00904 313 CDD SANT 135 180 IPR001005 -
Lapu3g00904 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Lapu3g00904 313 FunFam transcription factor MYB1R1 134 185 - -
Lapu3g00904 313 MobiDBLite consensus disorder prediction 72 123 - -
Lapu3g00904 313 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00904 Lapu-Chr3 9775597 9777801 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g00904 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00904 - - gmx:100812196 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00904 3 9775597 9777801 Lapu3g00904 3 9775597 9777801 ECH