Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00893 ATGAAGAGACAATTGCATGCTACTGCAAGAGTATTTCAGGCCGAAGGAAATGTTTCAACGGGTCCTGTTGTTATAGAAGCACCTAGTGGTTTTCTCTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCCGGGCAAATCAGAAGCACGCAGAAGCAGCAGCATCTTACAGTAAGAATCAACAAATTAAAGCTCGAGTAATGCAGAAGCAACAAGAACAAGAGTTTCAGAATACAAACCAGAATCAACAAGCACAAATGCAACTGTTATTGCAAAGACGTGCTCAGCAGCAGCAACGTCTAGCTGGAACGCAACTTCTTAGTGGCAGTTCTAGCTGTCCCATTAGCAATGATCCTTTAATGATGCAGAACCGGGCAGCTTCTAATGCTATGGCAACAAAATTATACGAGGACAGGTTGAAGCTTCCATTTCAGAGAGATGCTTCAGAAGATGCAAACATTAAGCAAAAGGTATCTGATGACATTGGTCAACTTTTAAACCCAAACCATGCTGTGTTATTGAAAGCAGCAGGAACATCTAGTGAACTGGCTTCAGGGCAGACGTTGCTCAGTGCTCCTAGCATTTTACCGGGAAACATTCAACATGTTCAAAATCTGAACCAGAAACTTCCAGGGTCTACACAAGACACAAAGGGTGAGATGAATGCATTGCTGAGGTCTCAAGCTGTTGTTTCAGAAGGATCCTTTATTGATTGTCATGGTTCAAATCCAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAGGACTGGATGAGCTTTTCTCTATTCTCCACCCGAATAATTTGATTCACCCTTCACAATCTTTCAATCAACTTTCTCTACGGCAGCAACTTATGTTTCAGGCACAACAAAATTTGATTTCTCCTTCTGTCATTGATATTGAGAGAAGAAGACTTGGGATGTTTTTTAATGATATGGATCTTGTGAAAGATGGCCAATCAAATTCTGTAGATGATTTAGGTCCCAGTAATGGATCACCTGCACAAGTTGGTTCCCCAATGTTGCCCCATCCAGACTCAGATGTGTTCTTTAAGCAGCTTCAACAATATTCACAACATCCTCTTCCAAGCAAACCTTCTGAGAATCTCCCGCAGCAAGAAAAACTTGGTCCTGGTCATGGAAGCATGACGGTAGAGGGAAATGTGTCCAATTCCTTACAAGGAAACGATCAGGCTCCAAAAAGTAAAACAGTGCGAAAGCGAAAATCAGCATCATCTTCAGGTCCTGGCAATAGCTCTGGAACTGCAAATACCACAGGACCACCTGCCAGTTCACCTTCAACACCATCTACACAAACACCTGGAGAGATGATAACAGTGTCAACTCTGCAACAGAATGCTCCTTCCACTAAGTCATCATTTATGTTTGGTACTGATGGTTTGGGCTCTCTTACATCATCGCAAAATCAACTGGCTGATATGGATCACCTTGTGAGTGATGGATGTTTGGGTGACAATATTGAGTCATTCTTATCTCCTGATGACACGGACCCTGGAGAAAAAGTTGGCAAAGGATCCATTCTCAAGGAGATCAAGCATATAATGGCAGGTTCACATAAAGTTGAGTGTTGTCACTTCTCATCGGATGGAAAACTTCTTGCTACTGGTGGTCATGATAACAAGGTCTCTTTGTGGTGCACTGAATTGTTTAACCAGAAATCTACTCTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGTCCAAGCATGTTGCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATATTGATAATCCAAGTTTTTCTCTTCGAACATTCACTGGACATGCTACAACTGTGACGTCTCTAGATTTTCACCCTAGCAAAGATGACCTTATTTGTTCATGTGACAATAGTGAGATTCGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAGGTGAGATTTCAACCTTGTTTGGGAAGGATTCTTGCAGCTGCAGTAGATAATTTCGTATCCATTTTTGATGTAGAAACCCTGGGTTGCAGACTTAAATTACAGGGCCATAATAATGTTGTGCGTTCTGTGTGCTGGGATTTGAATGGAAAATATCTGGCTTCTCTTAGTGATGATCTGGTTAGAGTATGGACTGTTGGATCTGGTGTCAAAGGGGAATGCATTCACGAGATGGCTGCATCTGGGAACAAATTCAACACCTGTGTTTTCCATCCCCGCTATCCTTTGTTGGTCATTGGCTGCAATAAGACTCTTGAGTTGTGGGACTTCGGTGAGAACAAGACATTGACTATGCATGCACACGAAAAGGCTATATCTTCCTTGGCAGCATCAAATGTTACTGGGTTGCTGGCTTCAACTAGTCACGACAAACACTTCAAGATCTGGAAATGA 2421 0.4238 MKRQLHATARVFQAEGNVSTGPVVIEAPSGFLFEWWSVFWDIYIARANQKHAEAAASYSKNQQIKARVMQKQQEQEFQNTNQNQQAQMQLLLQRRAQQQQRLAGTQLLSGSSSCPISNDPLMMQNRAASNAMATKLYEDRLKLPFQRDASEDANIKQKVSDDIGQLLNPNHAVLLKAAGTSSELASGQTLLSAPSILPGNIQHVQNLNQKLPGSTQDTKGEMNALLRSQAVVSEGSFIDCHGSNPGGSNLTLKGWPLAGLDELFSILHPNNLIHPSQSFNQLSLRQQLMFQAQQNLISPSVIDIERRRLGMFFNDMDLVKDGQSNSVDDLGPSNGSPAQVGSPMLPHPDSDVFFKQLQQYSQHPLPSKPSENLPQQEKLGPGHGSMTVEGNVSNSLQGNDQAPKSKTVRKRKSASSSGPGNSSGTANTTGPPASSPSTPSTQTPGEMITVSTLQQNAPSTKSSFMFGTDGLGSLTSSQNQLADMDHLVSDGCLGDNIESFLSPDDTDPGEKVGKGSILKEIKHIMAGSHKVECCHFSSDGKLLATGGHDNKVSLWCTELFNQKSTLEEHSEWITDVRFCPSMLRVATSSADKTVRVWDIDNPSFSLRTFTGHATTVTSLDFHPSKDDLICSCDNSEIRYWSIKNGSCTGVFKGGATQVRFQPCLGRILAAAVDNFVSIFDVETLGCRLKLQGHNNVVRSVCWDLNGKYLASLSDDLVRVWTVGSGVKGECIHEMAASGNKFNTCVFHPRYPLLVIGCNKTLELWDFGENKTLTMHAHEKAISSLAASNVTGLLASTSHDKHFKIWK* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00893 806 Pfam WD domain, G-beta repeat 606 641 IPR001680 GO:0005515
Lapu3g00893 806 Pfam WD domain, G-beta repeat 528 555 IPR001680 GO:0005515
Lapu3g00893 806 Pfam WD domain, G-beta repeat 563 598 IPR001680 GO:0005515
Lapu3g00893 806 Pfam WD domain, G-beta repeat 686 720 IPR001680 GO:0005515
Lapu3g00893 806 Pfam WD domain, G-beta repeat 772 806 IPR001680 GO:0005515
Lapu3g00893 806 ProSitePatterns Trp-Asp (WD) repeats signature. 585 599 IPR019775 -
Lapu3g00893 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 774 806 IPR001680 GO:0005515
Lapu3g00893 806 MobiDBLite consensus disorder prediction 323 445 - -
Lapu3g00893 806 MobiDBLite consensus disorder prediction 387 403 - -
Lapu3g00893 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 566 607 IPR001680 GO:0005515
Lapu3g00893 806 MobiDBLite consensus disorder prediction 354 374 - -
Lapu3g00893 806 PANTHER TRANSCRIPTION ACTIVATOR MSS11 1 66 - -
Lapu3g00893 806 SMART WD40_4 767 806 IPR001680 GO:0005515
Lapu3g00893 806 SMART WD40_4 517 556 IPR001680 GO:0005515
Lapu3g00893 806 SMART WD40_4 559 598 IPR001680 GO:0005515
Lapu3g00893 806 SMART WD40_4 644 680 IPR001680 GO:0005515
Lapu3g00893 806 SMART WD40_4 602 641 IPR001680 GO:0005515
Lapu3g00893 806 SMART WD40_4 683 721 IPR001680 GO:0005515
Lapu3g00893 806 SMART WD40_4 727 765 IPR001680 GO:0005515
Lapu3g00893 806 Gene3D - 657 806 IPR015943 GO:0005515
Lapu3g00893 806 CDD WD40 520 806 - -
Lapu3g00893 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 609 650 IPR001680 GO:0005515
Lapu3g00893 806 Gene3D - 450 656 IPR015943 GO:0005515
Lapu3g00893 806 SUPERFAMILY WD40 repeat-like 529 806 IPR036322 GO:0005515
Lapu3g00893 806 Coils Coil 74 101 - -
Lapu3g00893 806 MobiDBLite consensus disorder prediction 412 445 - -
Lapu3g00893 806 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 609 646 - -
Lapu3g00893 806 MobiDBLite consensus disorder prediction 326 340 - -
Lapu3g00893 806 ProSiteProfiles Trp-Asp (WD) repeats profile. 524 555 IPR001680 GO:0005515
Lapu3g00893 806 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 774 806 - -
Lapu3g00893 806 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 566 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00893 Lapu-Chr3 9610983 9623771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00893 603 805 Miscellaneous Gene Families AT5G08390 26.190 2.46e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lapu3g00893 WD40 0.065 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00893 - - vun:114177037 1271.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00893 3 9610983 9623771 Lapu3g00893 3 9610983 9623771 ECH