Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00890 ATGGCATCACCATCAGAACTAAGTCTGGATTGCAAGCCCCAGAGCTATTCCTTGCTACTCAAATCATTTGGAGATCAAACTGATCAGACCTACAAGCTCGAAGAATTCCTCTCTCGTTTAGAGGAAGAACGTCTCAAGATAGACGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCCATGGAGGCTTCAAGACAGCAACTTCAAGCCTTTAAAGTAAACCATGGCGCAAAGCCAGTTCTTGAAGAATTCATACCCATGAAGCACTTAGCCTCAGAAAGCTCAGAGAAGGCAACAAACATGTCTGACAAGGCAAATTGGATGACATCTGCGCAACTGTGGAGCCAAGCAAGCGAAGGAACCAAACAACAACCAACATTAACATCACCCAAAGAAGCTGATATAGGCTTCAGCATCAGCCCCAAGCTGGCTCTAGACAACAAACAGAGGAACGGTGGAGGGGCCTTCCTTCCATTCTCAAAGGAGAGAAACTCCTGCCAAGGCTCTACATTGCGGCCTCTACCTGAACTGGCCCTGGCCTCTTCGGAGAAAGAAGTGGAGGACAAGAAACGTGCAGAGGTAGAAAAGGGAGTTTCGTGTCAGAATAAGAAGGAGAATTCTGGCAGTGATGGAGCTGTGGTTGATCAAGGAAAAAGTGGTAGCCCAGTTGCATCATCTCTTGCACAAACAACAACAACAACTGCGCAAACTCATAGGAAAGCTAGAAGGTGCTGGTCACCAGACTTGCACCGTCGATTTGTTAATGCTCTTCAGATGCTTGGTGGATCACAAGTGGCAACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGTCATTTGCAGAAATATAGGCTTCACACTAGAAGACCCAGTCCAAGTCCTCAAGCGAGTGCAGCAGCACCACAGCTCGTGGTCCTAGGCGGAATCTGGGTCCCACCGGAATATGCCACTGCGGCACACACAGCCACCCCAACTCTCTACGGCGCCCACCCAACCTCTCACGCTCCGCCGCCACACTACTGCACCGCCACTCCTGTGCCGCAAGAGTTCTACACTGCAACGCCGCAGCAGCAGCTGCTTCCGCCTCCTCCGTCGCACCACAACGCGCTGCATCACCTGCACATGTACAAGGCGGCGGCACATGGCCGCGGATCACCGGAATCAGACGTTCCCGGCGGCGGAGAGCGCTCGGAGAGCATAGAGGACGGGAAGTCGGAGAGTAGCAGTTGGAAGGGAGAGAGTGGAGAGAACGAAGGGGAGAGGAAAGGGATGTGTGAAGAGAGCAATGGGAGTGAAATCACTCTGAAATTCTAG 1353 0.5144 MASPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFKVNHGAKPVLEEFIPMKHLASESSEKATNMSDKANWMTSAQLWSQASEGTKQQPTLTSPKEADIGFSISPKLALDNKQRNGGGAFLPFSKERNSCQGSTLRPLPELALASSEKEVEDKKRAEVEKGVSCQNKKENSGSDGAVVDQGKSGSPVASSLAQTTTTTAQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQASAAAPQLVVLGGIWVPPEYATAAHTATPTLYGAHPTSHAPPPHYCTATPVPQEFYTATPQQQLLPPPPSHHNALHHLHMYKAAAHGRGSPESDVPGGGERSESIEDGKSESSSWKGESGENEGERKGMCEESNGSEITLKF* 451
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00890 450 Gene3D - 243 301 - -
Lapu3g00890 450 NCBIfam myb-like DNA-binding domain, SHAQKYF class 244 299 IPR006447 GO:0003677
Lapu3g00890 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 241 301 IPR017930 -
Lapu3g00890 450 Coils Coil 33 53 - -
Lapu3g00890 450 MobiDBLite consensus disorder prediction 392 450 - -
Lapu3g00890 450 MobiDBLite consensus disorder prediction 185 204 - -
Lapu3g00890 450 MobiDBLite consensus disorder prediction 183 247 - -
Lapu3g00890 450 MobiDBLite consensus disorder prediction 407 440 - -
Lapu3g00890 450 MobiDBLite consensus disorder prediction 205 244 - -
Lapu3g00890 450 Pfam Myb-like DNA-binding domain 246 297 IPR001005 -
Lapu3g00890 450 SUPERFAMILY Homeodomain-like 241 302 IPR009057 -
Lapu3g00890 450 MobiDBLite consensus disorder prediction 159 178 - -
Lapu3g00890 450 FunFam Myb family transcription factor 243 301 - -
Lapu3g00890 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 424 IPR044787 GO:0003700|GO:0006355
Lapu3g00890 450 Coils Coil 58 78 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu3g00890 Lapu-Chr3 9560932 9563950 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00890 1 450 G2-like Transcription Factor Family AT2G03500 50.725 9.09e-134 390
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu3g00890 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00890 - - gmx:100807925 809.675
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00890 3 9560932 9563950 Lapu3g00890 3 9560932 9563950 ECH