Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00889 ATGACGATAGACGACGATAGCTCTATATATGTAGGGGGTCTCCCTTACGACATCACCGAAGAAACCATTCGCACTGTCTTCAATTTGTATGGTGCCATTCTCGATGTGAAGATTATCAACGACCAACGCAGTAGGGGGAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCTGCAATCGACGCCATCAACGACATGAATGGCAGAACCATTGACGGGCGTGTGGTTAAGGTTAATGGGGTGAGGTCTCGTGGGGGCAGGTCAAACTTTGGCCGAGAGCGGTATTATTATCATAATGATGAGAGGAATGGAGATTGGGATCGTGGGAGAGATCGAGACCGAGATTATGATCATGATAATAATGGTAGGGATGTATACAGGAATCGGAGCAATGATTGGAATCGAGACCGTGATAGGTCTCGAGACCGAGACCAGGACAGGGATAGGAGATTTGAGCATATGCATGATTATGATCAAGATAGAGATCCTATGCTAGATAATGAGTGGAGTAGAGAGGATGATAGAGTTGAAGATGAACAAGAACTTAGCAGGGGAGATGGTGGAGATGTCGATAGAGACCACAACTTGGATTTGAATGCAGACAGGAAAATGGATAGGACAAGTGACCCTGATAGAAGTTTTGATGAGGATAGAAAAGATCAGTCAAGGAGAAACAATGACTTGAATGTTACAAATCAACACAGCATGGATCTTTCATCAGAATCAACTGGTACTCATGATGATCAGGTAGAAGCTCAATTAGAGAGCTCAACTAAACAGCTTGATCAACTAAAAAAAGAGGTTTCTCAAATGGAAGAGGGATTGAAAGAGAAAAGGGTCCATGTTAAGGAATTACAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCAATGCAAAGAAAAGCTCTTCATATCGTCAGACGCAGTTGATAAAGCTGCATAAATGTTTTCTGCAAGTGAAAGATTACACAGAAAGACTTAAAACTAGTGAAAAGGAACTTCAGGCTCTAATTGATACGGTAATGTTAGAGATTGATGGTGATGGCGTTGGATTAAAGGATGGACAACTAACAAATGGAAATCTTGATGCTAGATAG 1101 0.4151 MTIDDDSSIYVGGLPYDITEETIRTVFNLYGAILDVKIINDQRSRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRSRGGRSNFGRERYYYHNDERNGDWDRGRDRDRDYDHDNNGRDVYRNRSNDWNRDRDRSRDRDQDRDRRFEHMHDYDQDRDPMLDNEWSREDDRVEDEQELSRGDGGDVDRDHNLDLNADRKMDRTSDPDRSFDEDRKDQSRRNNDLNVTNQHSMDLSSESTGTHDDQVEAQLESSTKQLDQLKKEVSQMEEGLKEKRVHVKELQKQSKKLEDALINAKKSSSYRQTQLIKLHKCFLQVKDYTERLKTSEKELQALIDTVMLEIDGDGVGLKDGQLTNGNLDAR* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00889 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Lapu3g00889 366 Gene3D - 2 97 IPR012677 -
Lapu3g00889 366 CDD RRM_SF 9 80 - -
Lapu3g00889 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Lapu3g00889 366 Coils Coil 248 303 - -
Lapu3g00889 366 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 195 - -
Lapu3g00889 366 SMART rrm1_1 8 80 IPR000504 GO:0003723
Lapu3g00889 366 MobiDBLite consensus disorder prediction 227 252 - -
Lapu3g00889 366 MobiDBLite consensus disorder prediction 108 226 - -
Lapu3g00889 366 MobiDBLite consensus disorder prediction 108 252 - -
Lapu3g00889 366 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Lapu3g00889 366 Coils Coil 321 341 - -
Lapu3g00889 366 PANTHER GEO13361P1-RELATED 7 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00889 Lapu-Chr3 9552585 9556469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00889 3 79 Eukaryotic Initiation Factors Gene Family AT2G36660 33.766 5.75e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00889 - - vun:114179118 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00889 3 9552585 9556469 Lapu3g00889 3 9552585 9556469 ECH