Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00888 ATGAAGGATCCAGCGGAGGATCAAGTGAAATCTAGGAGGGCCCTGCAGAGATCAAAAGACCTTAGAAGAAGAGATAGAAGAAGCCAATGCAAACAAGATAAATTACAAGAAACAGGACTTGACTCACAATTGGTTTCCTCTGCTTGCAAAAGTCTTGTGTTTCCTGCCAGACCTGGCTATGGCCAGCTGGGGACAAAGTGTCTGGTCAAAGCTAATCACTTCCTGGCAGATATATCAGCTTCTGACTTGAGCCATTACAATGTTAAAATAACACCTGAAGTTACTTCTCGTAAAACAAGCAAAGCCATCATAGCTGAGTTGGTGAGGCTTCACAGGAACACTGACTTGGGGACGAGGCTTCCTGTTTATGATGGAGGAAGAAATCTCTACACTGCTGGCATGCTTCCTTTTGCATCCAAAGAGTTCTCCATAATATTTAGCGAGGATGATGAGTGTATTGGTAGTACCAGGGAAAGAGAATTTGAAGTGGTGATAAAGTTCGCAGCTCGTGTTAGCATGCATCAATTACGTGAGCTTCTGAGTGGGAAACAAGTGGACACCCCGCAAGAAGCGCTTACTGTCATTGACATTGTATTGAGGGAGCTTGCAGCTCAGAGCTACGTGTCAATTGGGAGGTTTCTCTATTCTCCGGATTTAAGAAAACCTCAGCAGTTAGGTGGTGGTCTGGAATCATGGCGTGGCTTCTACCAAAGTATAAGGCCTACTCAGATGGGATTGTCACTTAATATTGACATGTCATCAATGGCGTTTATTGAACCACTCCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGCTCTCAAAGCCACTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTACGAGGTGTGAAAGTCGAAGTTACACATAGAGGAAGTTTTCGAAGGAAGTACAGAATTACAGGATTGACATCACAGCCTACAAGGGAGCTCAATTTCCCCGTCGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATTATATATTCTCATCTACCCTGCCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTGCCTATGGAGGCATGTAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGATATTCTACAGACAATTCAACAAAATAATTATGAGAATAATCCCTATGCTAGGGAGTTTGGTATCAGCATTGACAACAAACTTGCATCAGTTGAAGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGACACTGGCAGAGAGAAAGAATACTTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTTATAAACGGAAGCACCGTAAGATATTGGGCATGTATTAATTTCTCACGAAGTATCCAAGAAATTGCTCGCGGGTTTTGCCAACAATTGGTTCAAATGTGTCAAATCTCAGGCATGGAATTTAGTCTAGACCCTGTGATTCCTATTTATTCAGCAAGACCTGATATGGTAAAGAAAGCCTTGAAGTACGTACATTCTGCTGTACGAGATAAACTTGATGGGAAAGAACTAGAGTTGCTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGTGATCTCAAAAGAATCTGTGAAACAGATCTGGGGTTGATTTCTCAGTGCTGTCTTTCAAAACACGTATTCAAGATCAATAGACAGTATCTGGCAAATGTGGCCCTAAAGATCAATGTCAAGTTGGGAGGAAGGAACACAGTACTTTTGGATGCCCTAAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATTTTTGGAGCTGATGTAACACATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCTGAAGTAACAAAGTATGCAGGATTAGTATGTGCTCAGCCTCATCGGGAGGAACTCATTCAAGATCTTTTTAAATGTTGGAAGGATCCTCATCATGGTATAGTCTATGGTGGCATGATCAGAGAGCTGTTACTCTCGTTTAAGAAGGCAACCGGACAAAAACCGTTGAGAATAATATTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGTTGTACGAGCTTGATGCCATCCGTAAGGCTTGTGCATCTTTGGAACCGAGTTACCAACCTCCGGTAACATTTGTTGTGGTTCAAAAACGGCATCACACCAGACTATTCTCAAACAATCATGACGACAGAAACAGCACTGATAAGAGTGGGAATATCTTACCTGGTACCGTGGTGGATTCTAGAATCTGTCATCCTACGGAATTTGATTTCTATTTATGCAGTCATGCGGGAATTCAGGGTACAAGTAGACCAGCTCATTATCATGTTCTGTGGGACGAAAACAATTTCACTGCTGATGAGATTCAATCTCTGACCAACAACTTGTGCTACACATATGCAAGATGTACACGATCTGTTTCTGTAGTGCCTCCTGCGTACTATGCTCACTTGGCAGCATACAGAGCTCGCTTCTACATGGAACCAGATGTTCATGAGATTGCAAAATCTCGAGGTGCTAGATCAAAAGATGAGTCAGTTCGGCCACTACCAGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGCTGA 2718 0.4246 MKDPAEDQVKSRRALQRSKDLRRRDRRSQCKQDKLQETGLDSQLVSSACKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYNVKITPEVTSRKTSKAIIAELVRLHRNTDLGTRLPVYDGGRNLYTAGMLPFASKEFSIIFSEDDECIGSTREREFEVVIKFAARVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSYVSIGRFLYSPDLRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVLSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRITGLTSQPTRELNFPVDEKMNMKSVVDYFQEMYGYTIIYSHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQQNNYENNPYAREFGISIDNKLASVEARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSIQEIARGFCQQLVQMCQISGMEFSLDPVIPIYSARPDMVKKALKYVHSAVRDKLDGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLSKHVFKINRQYLANVALKINVKLGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSRICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVHEIAKSRGARSKDESVRPLPALKEKVKNVMFYC* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00888 905 SMART Piwi_a_2 548 869 IPR003165 GO:0003676
Lapu3g00888 905 SUPERFAMILY Ribonuclease H-like 541 870 IPR012337 -
Lapu3g00888 905 MobiDBLite consensus disorder prediction 1 15 - -
Lapu3g00888 905 Pfam N-terminal domain of argonaute 66 199 IPR032474 -
Lapu3g00888 905 SMART DUF1785_2 208 260 IPR014811 -
Lapu3g00888 905 FunFam Protein argonaute-2 254 380 - -
Lapu3g00888 905 CDD PAZ_argonaute_like 260 374 - -
Lapu3g00888 905 MobiDBLite consensus disorder prediction 1 34 - -
Lapu3g00888 905 FunFam Argonaute 10 439 611 - -
Lapu3g00888 905 Pfam PAZ domain 286 391 IPR003100 GO:0005515
Lapu3g00888 905 SMART PAZ_2_a_3 265 397 IPR003100 GO:0005515
Lapu3g00888 905 Gene3D - 439 611 - -
Lapu3g00888 905 Pfam Argonaute linker 2 domain 403 447 IPR032472 -
Lapu3g00888 905 FunFam protein argonaute 10-like 617 905 - -
Lapu3g00888 905 ProSiteProfiles Piwi domain profile. 548 869 IPR003165 GO:0003676
Lapu3g00888 905 Gene3D - 617 905 IPR036397 GO:0003676
Lapu3g00888 905 SUPERFAMILY PAZ domain 256 415 IPR036085 GO:0005515
Lapu3g00888 905 CDD Piwi_ago-like 419 868 IPR045246 -
Lapu3g00888 905 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 53 870 - -
Lapu3g00888 905 ProSiteProfiles PAZ domain profile. 261 375 IPR003100 GO:0005515
Lapu3g00888 905 Gene3D paz domain 255 379 - -
Lapu3g00888 905 Pfam Piwi domain 549 868 IPR003165 GO:0003676
Lapu3g00888 905 Pfam Mid domain of argonaute 458 534 IPR032473 -
Lapu3g00888 905 Pfam Argonaute linker 1 domain 209 258 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00888 Lapu-Chr3 9525075 9540381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00888 39 905 Eukaryotic Initiation Factors Gene Family AT5G43810 74.201 0.0 1390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00888 K11593 - gmx:100808457 1725.29