LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g00885	ATGGACAAGAAAAAGGTAGCAGTTCCCCTCGTGTGCCACGGCCATTCGCGCCCCGTGGTCGATCTCTTCTACAGTCCTGTTACGCCCGATGGCTTTTTCCTCATCAGTGCAAGCAAGGATTCTAGTCCTATGCTCAGAAATGGGGAGACTGGAGATTGGATTGGGACATTTGAAGGGCACAAAGGTGCTGTGTGGAGTTGCTGCTTGGATACTAATGCCTTACGTGCTGCAACTGCTTCTGCTGACTTCTCGACGAAAGTTTGGGATGCTTTAACAGGAGATGAATTGCACTCATTTGAGCATAAGCACATTGTTCGGGCATGTGCCTTTTCAGAGGATACTCACCTTTTACTCACTGGGGGAGTTGAAAAAATTCTCCGCATCTATGATATGAATCGGCCTGATGCACCACCCAGAGAGGTGGATAAATCCCCTGGTTCTGTCCGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACCGATATGGGAGGAGTCAGGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTTGAAACCAAGTCGTCTGTGACAAGCGCTGAAGTGAGTCAGGATGGCCGTTATATTACAACTGCTGATGGTTCTACTGTAAAGTTTTGGGATGCTAATTACTATGGATTGGTGAAGAGCTATGATATGCCCTGCACCGTGGAATCAGTTTCCCTGGAGCCTAAGTATGGGAACAAGTTCGTTGCCGGAGGAGAAGATATGTGGGTTCATGTTTTTGACTTTCATACAGGCAATGAGATTGCAGCTTGCAACAAGGGGCACCATGGTCCTGTCCACTGTGTTCGTTTTTCTCCTGGTGGAGAATCCTATGCCTCCGGGTCTGAGGATGGAACTATCAGAATATGGCAGACTGGCCCATTGACTCTCGATGACTCGGAGGCCTTGTCTGCAAATGGATCAATTGATAAGGTGAAGGTAACTGCAGACGAGGTTTCACGCAAGATTGAGGGTTTTCATATTGCTGATGAGGGGAAATCTAAAGCAAAGGATGAGGCTGTGGAGGAGTCAAGCTAA	1062	0.4736	MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESVSLEPKYGNKFVAGGEDMWVHVFDFHTGNEIAACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTLDDSEALSANGSIDKVKVTADEVSRKIEGFHIADEGKSKAKDEAVEESS*	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g00885	353	Gene3D	-	9	327	IPR015943	GO:0005515
	Lapu3g00885	353	FunFam	Serine-threonine kinase receptor-associated protein	8	321	-	-
	Lapu3g00885	353	ProSiteProfiles	Trp-Asp (WD) repeats profile.	267	299	IPR001680	GO:0005515
	Lapu3g00885	353	ProSiteProfiles	Trp-Asp (WD) repeats profile.	57	98	IPR001680	GO:0005515
	Lapu3g00885	353	CDD	WD40	14	299	-	-
	Lapu3g00885	353	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I	7	342	-	-
	Lapu3g00885	353	Pfam	WD domain, G-beta repeat	268	298	IPR001680	GO:0005515
	Lapu3g00885	353	Pfam	WD domain, G-beta repeat	179	214	IPR001680	GO:0005515
	Lapu3g00885	353	Pfam	WD domain, G-beta repeat	54	89	IPR001680	GO:0005515
	Lapu3g00885	353	Pfam	WD domain, G-beta repeat	94	130	IPR001680	GO:0005515
	Lapu3g00885	353	SMART	WD40_4	92	130	IPR001680	GO:0005515
	Lapu3g00885	353	SMART	WD40_4	259	299	IPR001680	GO:0005515
	Lapu3g00885	353	SMART	WD40_4	134	174	IPR001680	GO:0005515
	Lapu3g00885	353	SMART	WD40_4	177	214	IPR001680	GO:0005515
	Lapu3g00885	353	SMART	WD40_4	217	256	IPR001680	GO:0005515
	Lapu3g00885	353	SMART	WD40_4	5	47	IPR001680	GO:0005515
	Lapu3g00885	353	SMART	WD40_4	50	89	IPR001680	GO:0005515
	Lapu3g00885	353	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	267	299	-	-
	Lapu3g00885	353	SUPERFAMILY	WD40 repeat-like	4	303	IPR036322	GO:0005515

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g00885	9	297	Eukaryotic Initiation Factors Gene Family	AT2G46290	28.440	1.24e-38	139

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g00885	K13137		-	gmx:100818422	707.212

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu3g00885	3	9485470	9490562	Lapu3g00885	3	9485470	9490562	ECH