Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00883 ATGAAGGGGGAAGTACAGCTTCAGCCTCCACCGGTTATGCAAAACCCTAGTGATTCGGACCCTTTGCTCCTTAACCAGGAGGAAGATGAGTCACCGGGAAGCTCTGGTGAGATCAAGGATGACGACGAAGACGTTGAGGCAGGCTTACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCTGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGTACTCAACAGTTTGTCCATCGCTCATGTCTTGATCATTGGCGCTCTGTAAAGGAAGGATTTGCCTTCTCACACTGCACCACCTGCAAAGCCCAATTTCATCTTAAAGTTGAATTGTTTGAGGACAACTCTTGGCGTAAAATGAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAGACTGTGATTGCAGCTATTGGTGGCTTTGCGTACATCATGGACAAAGATGGTTCCTTCAGGAACTCATTTGATGATGGCTGGGATAAGATACTGTCAAAGCATCCAATTCCATTTTATTATTGTATTGGAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTTGGTCTCATACTGCATTGCTCCTCCCTCAATACTAATGACCCCAGGATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCCTGGATTGCTTTCCCGCTTCAATGGAGGCATGCTTTGCCCTTGTGGTTGTTTTCGTTGTCATCTTTGCAATTCTTGGTATAGCATATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTATCATATCCTCACTAAGAGAGAGCTTACGAAGGAATACATAGTAGAGGATCTTCGTGGTTGTTATTTCCCACCAAAGTTGGACCCAGAACATGAAGGCCGCTTGAAAATGCTAAAGCTTTTGTGA 927 0.4509 MKGEVQLQPPPVMQNPSDSDPLLLNQEEDESPGSSGEIKDDDEDVEAGLLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVELFEDNSWRKMKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGSFRNSFDDGWDKILSKHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNTNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLRGCYFPPKLDPEHEGRLKMLKLL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00883 308 ProSiteProfiles Zinc finger RING-CH-type profile. 45 110 IPR011016 GO:0008270
Lapu3g00883 308 SMART ringv_2 52 104 IPR011016 GO:0008270
Lapu3g00883 308 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 308 - -
Lapu3g00883 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 118 IPR013083 -
Lapu3g00883 308 Pfam RING-variant domain 53 103 IPR011016 GO:0008270
Lapu3g00883 308 CDD RING_CH-C4HC3_MARCH 53 104 - -
Lapu3g00883 308 MobiDBLite consensus disorder prediction 1 41 - -
Lapu3g00883 308 SUPERFAMILY RING/U-box 51 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00883 Lapu-Chr3 9454561 9460377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00883 1 308 C3H Transcription Factor Family AT1G11020 78.816 9.06e-170 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00883 - - gmx:100818950 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00883 3 9454561 9460377 Lapu3g00883 3 9454561 9460377 ECH