Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00882 ATGTTGGTCTCCATGTCCGTCTGCGGCCAAGAAGAGATTGAACTGTCACGAGATGGCAGCCACTACAGTCTCTCCACCGGAATACTTCCTTCTCTCGGAGCAAAAAGCAACCGCAGAATCAAGCTCCGCCCCTTCATTTTATCGCCCTACGACCGTCGTTACAGGATATGGGAAACTTTCCTGGTTATTCTGGTAGTTTATACTGCTTGGGTTTCTCCCTTCGAATTCGGGTTCCTGAAGAAGCCACAAACACCCCTTTCCATTTCCGATAATATTGTCAATGGATTTTTTTTCGTGGATATAGTTCTCACCTTCTTCGTGGCTTACATTGACAAAAGCACCTATTTGATCGTGGATGACCGAAAACAGATTGCTTGGAAATATACAAGGAGTTGGTTGGTCTTGGATGTTATCTCCATCATTCCTTCAGAGCTTGTACTTAAGATATCACCTTCTCCTCTTCAATCTTACGGTTTATTCAACATGCTTCGCCTTTGGCGTCTTCGAAGAGTCAGTGCTTTGTTTTCTCGGCTTGAGAAGGACAGAAACTTTAACTATTTTTGGGTTCGATGTGCTAAGCTTATTTCTGTTACCCTCTTCGCTGTTCATTGCGCTGCATGTTTCTATTATCTTATTGCTGCACGTTATCATGATCCAAAAAAGACATGGATTGGTGCAACGATGGATAATTTCCTTGAACGCAGCTTGTGGTCAAGATATGTGACATCTGTTTACTGGTCTATTACTACCTTAACAACTGTTGGTTATGGAGATTTGCATCCAGTGAACTCAAGGGAGATGACCTTCGACATCTTTTATATGCTCTTTAATCTGGGGTTAACAGCATATTTGATTGGTAATATGACCAATTTGGTTGTCCATGGCACAAGTCGAACCAGAAGATTTAGAGATACCATCCAAGCTGCCTCAAATTTTGCCCAAAGGAATCAATTGCCTCATCGGTTGCAAGACCAAATGCTTGCGCACTTGTGTTTGAAGTATAGAACAGACTCAGAAGGGTTGCAGCAGCAAGAGACACTTGATTCGCTTCCTAAAGCCATCAGATCTAGTATTTCACATTATCTTTTCTATTCTCTGATTGATAAGGTTTACTTGTTTCACGGGGTTTCAAATGACTTGCTCTTTCAATTGGTGTCAGAGATGAAAGCTGAATATTTTCCACCCAAAGAAGATGTTATCTTGCAAAACGAAGCCCCCACTGACTTTTATATACTGGTCACTGGTGCCGTGGACCTGCTAGTTCTTAAAAATGGGGTTGAACAGGTTGTTGGAGAGGCCAAAACTGGTGATCTTTGTGGTGAGATTGGTGTGCTCTGTTACAAGCCACAGCTTTTCACAGTTCGAACGAAGCGACTAAGCCAGTTGCTGAGGCTAAACCGTACTACTTTCTTGAATATTGTTCAGGCCAACGTGGGAGACGGAACCATAATCATGAACAATTTGCTTCAGCATTTGAAAGAGCTCAACGATCCAATCATGGAGGGAGTTTTGGTGGAGATTGAGAGCATGTTAGCTCGTGGTAGAATGGACCTACCAGTGAGTGTGTGCTTTGCGGCAGCAAGAGGAGATGACTTGTTGTTACATCAGTTGCTGAAACGAGGAATGGATCCAAACGAATCCGACAACAATCGAAGGACAGCTTTGCATATAGCAGCATCTCGAGGGAAAGAGAACTGTGTTATGCTTCTGTTAGATTATGGGGCGGATCCCAACATTAGAGATTTGGATGGTAATGTGGCACTATGGGAGGCTATGGTGGGAGAACATGAGACAGTGAGCAAGGTGTTGGCAGAAAATGGAGCTAACTTGCAATGCGGGGATGTGGGTCAGTTTGCATGTACCGCTGTTGAGCAGCACAGATTGAAGTTGCTGAAGGAAATAAGGCGCTATGGAGGAGATATCACACTTCAAAGCATCAACAGTGGGACCACAGCGTTGCACGTTGCAGTCTCGGAAGGTAATGTTGAAATTGTCAGATACCTTTTGGATCACGGGGCAAGCATTGATATGCCTGACAAGCATGGCTGGACTGCCAGAGGTCTAGCAGATCAGCAATCACATACAGAAATAAAAGCCATTTTTGACTCCACTGGGGAGCCTACGGTTCAGTCTTCCGTTGCCATTCCCGAGAAGCAGAGTAAGAGGAGGTACCTTGGAAGGTTTACTAGTGAACCAACCATGCCTTTACCCATTGACGGTTCATTTCACGGAACAGATGCCTCTTGGAACCAGAGTCAGAACCAGAACCGTCCAAGGCGTAGGAGCACCAATTATCATAACTCACTCTTAGGGATAATGGTAGCAGCACACAATGGGGAAAAAGACCTGCTTTCATCTCTTGACTTCAATAACAAGGCAAGGAATGACATGAAGAGTAGTAGTGCAGTTGGTCCAACTAGAATAATTATTAGTTGCCCTGAGAGGGGTGAGGTTGTGGGGAAGCTTGTTTTACTACCTGGAAGCTTTCAAGAGCTACTTGAGATTGGGGCCACAAAATTTGGTTTCAATCCTGCCAAGGTTGTATGCAAAGATGGAGGTGAAATTGAAGATTTAGAGGTTATTAGAGATGGTGACCATCTTGTCTTCCTCGGTGCTGGTGGGGTGGTAGAATCATCGAGGCCAGCTCCAGCACCACTTTCGAATGGCATGCATATG 2676 0.4439 MLVSMSVCGQEEIELSRDGSHYSLSTGILPSLGAKSNRRIKLRPFILSPYDRRYRIWETFLVILVVYTAWVSPFEFGFLKKPQTPLSISDNIVNGFFFVDIVLTFFVAYIDKSTYLIVDDRKQIAWKYTRSWLVLDVISIIPSELVLKISPSPLQSYGLFNMLRLWRLRRVSALFSRLEKDRNFNYFWVRCAKLISVTLFAVHCAACFYYLIAARYHDPKKTWIGATMDNFLERSLWSRYVTSVYWSITTLTTVGYGDLHPVNSREMTFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRRFRDTIQAASNFAQRNQLPHRLQDQMLAHLCLKYRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLIDKVYLFHGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGDLCGEIGVLCYKPQLFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVEIESMLARGRMDLPVSVCFAAARGDDLLLHQLLKRGMDPNESDNNRRTALHIAASRGKENCVMLLLDYGADPNIRDLDGNVALWEAMVGEHETVSKVLAENGANLQCGDVGQFACTAVEQHRLKLLKEIRRYGGDITLQSINSGTTALHVAVSEGNVEIVRYLLDHGASIDMPDKHGWTARGLADQQSHTEIKAIFDSTGEPTVQSSVAIPEKQSKRRYLGRFTSEPTMPLPIDGSFHGTDASWNQSQNQNRPRRRSTNYHNSLLGIMVAAHNGEKDLLSSLDFNNKARNDMKSSSAVGPTRIIISCPERGEVVGKLVLLPGSFQELLEIGATKFGFNPAKVVCKDGGEIEDLEVIRDGDHLVFLGAGGVVESSRPAPAPLSNGMHM 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00882 892 PANTHER POTASSIUM CHANNEL AKT1 20 869 IPR045319 GO:0005249|GO:0006813
Lapu3g00882 892 MobiDBLite consensus disorder prediction 744 762 - -
Lapu3g00882 892 ProSiteProfiles cAMP/cGMP binding motif profile. 372 474 IPR000595 -
Lapu3g00882 892 FunFam Potassium channel KAT2 360 496 - -
Lapu3g00882 892 FunFam Potassium channel SKOR 55 293 - -
Lapu3g00882 892 Gene3D Jelly Rolls 336 497 IPR014710 -
Lapu3g00882 892 Pfam KHA, dimerisation domain of potassium ion channel 807 869 IPR021789 -
Lapu3g00882 892 SMART cnmp_10 372 489 IPR000595 -
Lapu3g00882 892 SUPERFAMILY Voltage-gated potassium channels 49 293 - -
Lapu3g00882 892 SUPERFAMILY cAMP-binding domain-like 297 492 IPR018490 -
Lapu3g00882 892 Pfam Ion transport protein 55 299 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu3g00882 892 Gene3D - 56 293 - -
Lapu3g00882 892 ProSiteProfiles Ankyrin repeat region circular profile. 550 581 - -
Lapu3g00882 892 ProSiteProfiles Ankyrin repeat region circular profile. 648 680 - -
Lapu3g00882 892 SMART ANK_2a 583 612 IPR002110 GO:0005515
Lapu3g00882 892 SMART ANK_2a 648 677 IPR002110 GO:0005515
Lapu3g00882 892 SMART ANK_2a 550 579 IPR002110 GO:0005515
Lapu3g00882 892 SMART ANK_2a 517 546 IPR002110 GO:0005515
Lapu3g00882 892 PRINTS EAG/ELK/ERG potassium channel family signature 240 257 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu3g00882 892 PRINTS EAG/ELK/ERG potassium channel family signature 90 100 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu3g00882 892 PRINTS EAG/ELK/ERG potassium channel family signature 284 293 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu3g00882 892 PRINTS EAG/ELK/ERG potassium channel family signature 67 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu3g00882 892 PRINTS EAG/ELK/ERG potassium channel family signature 101 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu3g00882 892 PRINTS EAG/ELK/ERG potassium channel family signature 266 277 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lapu3g00882 892 Pfam Cyclic nucleotide-binding domain 392 476 IPR000595 -
Lapu3g00882 892 MobiDBLite consensus disorder prediction 735 762 - -
Lapu3g00882 892 SUPERFAMILY Ankyrin repeat 522 702 IPR036770 -
Lapu3g00882 892 ProSiteProfiles Ankyrin repeat profile. 648 680 IPR002110 GO:0005515
Lapu3g00882 892 CDD CAP_ED 372 477 IPR000595 -
Lapu3g00882 892 ProSiteProfiles KHA domain profile. 807 887 IPR021789 -
Lapu3g00882 892 Pfam Ankyrin repeats (many copies) 648 686 IPR002110 GO:0005515
Lapu3g00882 892 Pfam Ankyrin repeats (3 copies) 524 611 IPR002110 GO:0005515
Lapu3g00882 892 Gene3D - 518 702 IPR036770 -
Lapu3g00882 892 ProSiteProfiles Ankyrin repeat profile. 550 582 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00882 Lapu-Chr3 9446744 9453266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00882 15 869 Ion Channels AT2G25600 62.384 0.0 1091
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00882 K21867 - gmx:100819491 1619.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00882 3 9446744 9453266 Lapu3g00882 3 9446744 9453266 ECH