Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00871 ATGACTGCTCCTACCACTGTAACCGCCATCACCACCGCACCCAGTAGGGATGAACCCGACTACGACAGCAGCTCCTCCTCCATCACTGTGCCGGAATCCAGCCGGAGCTGGATGACCAACCTCAGCTTCGGAAGCCGGCGCCGCCGGAGCTCGGTCTCTGTGTGCTCCTCCACCCTGGAGAGTCCGCACGCGAGGCCCCACAAGGCCAACCAGGCTGCATGGGAGGTCATGCGGCGGCTCCGGCGTGACAAGGGGCAGGTGGGTCTGGAGCACTTCCGGCTGCTACGGCGGCTGGGGAGCGGCGACATCGGGAACGTGTATCTTTGCCAGATAAGGAACCCCGTGGTGGGATTGCCGCAGTGCTTTTATGCGATGAAGGTGGTGGACAGAGAGGCACTTGCGATAAGGAAGAAGCTGCAGAGGGCGGAGATGGAGAAGGAGATTCTGGCCATGCTTGATCACCCCTTCTTGCCTACTTTGTACACTGAGTTTGACGCTTCTCATTACTCTTGCTTGGTCATGGAGTTCTGCCCCGGTGGTGACTTGTATGCAGCACGCCAACGCCAGCCCGGGAAGCGCTTTTCCATAACATCCACTAGGTTTTATGCGGCTGAGACGCTATTGGCATTAGAGTATCTTCACATGATGGGCATAGTGTACAGGGATTTGAAGCCAGAGAATGTGCTTGTGAGGGAGGATGGACACATTATGCTTTCAGATTTTGATCTTTCGCTCAAATGTGACGTTGTTCCCAAGCTGTTAAGGAGTAAAACCAGAGTGGAACGCAGTATCAAGAGTACAAAGAGATCTGTGCCAGCCTGCACTGCCCCCATGCAGCCTGTGCTGTCATGTTTCTTGGCATCAAGCAAGAAAAAGAAAGCGACCGTGACAACAGTCATAAGGGAAAATGTTGAGGTGGAAGAGCTTGATCCAGAGCTGGTGGCTGAGCCTATTGATGCCAAGTCCAAGTCATTTGTGGGGACACATGAGTACTTGGCACCAGAAGTGATCTTGGGGCAAGGACATGGGAGTGCAGTGGACTGGTGGACGTTTGGGGTGTTCTTGTATGAGATGTTATACGGGAGAACACCCTTCAAAGGTGAAAATAATGAGAAAACTCTCGTCAACATTTTGAAGCAACCATTGGCTTTCCCTAGAATTGCAGTAAGCAGCAGCAAGGATTATGAAGAGATGGTGAAAGTTCAAGACCTTATAAGCAAGCTGTTGGTGAAGAATCCAAATAAGAGAATTGGAAGCTGTATGGGTTCTGTTGAGATCAAAAGGCATGAGTTCTTCAAGGGTGTAAATTGGGCATTAATTAGATCAGTTACGCCCCCTGAAGTCCCTAGTGATGTGAACAAAATTAGGAGTAGTAGGGTTTTGCTACCAAAACTAAGCAAAACAGACAGGGATCAGCCATATCAGCTTAGAACTCATCATTTTGAATACTTCTAA 1455 0.5052 MTAPTTVTAITTAPSRDEPDYDSSSSSITVPESSRSWMTNLSFGSRRRRSSVSVCSSTLESPHARPHKANQAAWEVMRRLRRDKGQVGLEHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILAMLDHPFLPTLYTEFDASHYSCLVMEFCPGGDLYAARQRQPGKRFSITSTRFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRVERSIKSTKRSVPACTAPMQPVLSCFLASSKKKKATVTTVIRENVEVEELDPELVAEPIDAKSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLAFPRIAVSSSKDYEEMVKVQDLISKLLVKNPNKRIGSCMGSVEIKRHEFFKGVNWALIRSVTPPEVPSDVNKIRSSRVLLPKLSKTDRDQPYQLRTHHFEYF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00871 484 SMART serkin_6 92 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00871 484 Coils Coil 125 145 - -
Lapu3g00871 484 SUPERFAMILY Protein kinase-like (PK-like) 74 453 IPR011009 -
Lapu3g00871 484 PANTHER FLIPPASE KINASE 1-RELATED 40 453 - -
Lapu3g00871 484 FunFam protein kinase PINOID 2 90 176 - -
Lapu3g00871 484 FunFam protein kinase PINOID 177 245 - -
Lapu3g00871 484 MobiDBLite consensus disorder prediction 1 31 - -
Lapu3g00871 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lapu3g00871 484 Gene3D Phosphorylase Kinase; domain 1 90 176 - -
Lapu3g00871 484 ProSiteProfiles Protein kinase domain profile. 92 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00871 484 Gene3D Transferase(Phosphotransferase) domain 1 319 450 - -
Lapu3g00871 484 Pfam Protein kinase domain 321 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00871 484 Pfam Protein kinase domain 93 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g00871 484 Gene3D Transferase(Phosphotransferase) domain 1 177 246 - -
Lapu3g00871 484 FunFam serine/threonine-protein kinase D6PK-like 320 450 - -
Lapu3g00871 484 CDD STKc_phototropin_like 91 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00871 Lapu-Chr3 9316012 9318192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00871 17 484 AGC Kinase Gene Family AT2G26700 59.048 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lapu3g00871 Pkinase 2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00871 K08286 - gmx:100777988 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00871 3 9316012 9318192 Lapu3g00871 3 9316012 9318192 ECH