Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00860 ATGGACGAAGATTCGCTCAAACGCAACACCGATTGTGTTTATTTCTTGGCCTCTCCCCTCACTTGCAAGAAGGGGGCTGAATGTGAGTATCGGCACAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGGTATCTGGCCAATGCCTTAATCCAACGTGTGCTTTTAGACACCCTCCTCTCGATGGGCATACTGGAGTGCCAGCGCCATCTGAACCTACACAAAATTCATTGCATGCAAACAAGACAATGGTTCCATGCTATTTTTACTTCAACGGATTTTGCAACAAAGGTGACAAATGCTCTTTTTTGCACGGGCATGATGATAGCGTTTTTACTGTGAAACCTGTGAAGAATGATAATGGAAGCACCGATGCACTCAATCTAGAAAATAAAACATCATCAGGAAATGGAACAGGTGTAGCGTCAGTACCAACTGACGAACCTTTAACTGCTCCAAAGAATTTGTCTGATTTTAAGCTTCTGCCCAAGAGAGATCGTCAATTACAGTTAACCAAAAATGTTAAGCAGCAAGGGGATTCCCTAGTGATATCTGCTTCAGAATATAAAGAAGCTGCCGTGAGTAGGTTAGACTCTCCGTTTCCAGATGATAGCTTTGTCCATAATGTATCTCATTTATGCACTGAGCAGAGTTCTGAGGAGCAAGTAAATAGTCAAATTGAGCCTGAGGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGACGTTCTTGTTCATGATGAATTGGAGAACTTGGGCTACGAGGAAGATTCTGAATATTTACAAGTGCTTGATAGAAATGAGCAAGAGCTGAACGACCAGTACTTGGGGTATGAATTTAAAGATCCAGTTGAGTATGATACCATGTACCCAGAAGCGGATATTCTGTATCCACAAGAAACATATGATGGTTACAGATGTTTTGATAGAGGCCTTGCTCATGCTAATGGCAGAACAGTTCGTACTTATTCCAGAGATATATTCTTAGATTCTATATTCTCCAGGAAAAGGATTCGGATGTCAGCTGAGGTGGCCGCTGCTTATGACAAGAATTTAGATCTACGTGATCATCTGAGGAGACGTAGAGAAAATAATGTGCCTCCCGTTGCAGGTTTCGTAAGAAGACAAGAATCATCTTCTTTGATGAATCGAAACCAGGAAAGGCATCAGAGGTCTGGCATTGAGCAGCGGCCAAGTAGAAGATTGACTTCACAACTGGGATATAGTGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATCGCTAACAAACACAGATTATTCAGGCATTCCCAGCAACATAGACCAAGGAAGCATTATAGAGAAAAACCAGCTAAACGACCATTTCTATCATCTAAAATATCCAGGAAACCAGTTTTTAAACAAAGGGGATTTATTCAGGAATCCACTACATTTTCAGGACCCAAGACTCTTGCAGAAATTAAAGAAGAGAAGAAGAAGGCTGAAGAAGGTTTACATTGGAAAAGCACATCAACAGATTTCCAGGATCCCAAACCTCTGAGTGAAATTCTCAAGGACAAAAGGACCATGGATTAG 1569 0.4194 MDEDSLKRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWVSGQCLNPTCAFRHPPLDGHTGVPAPSEPTQNSLHANKTMVPCYFYFNGFCNKGDKCSFLHGHDDSVFTVKPVKNDNGSTDALNLENKTSSGNGTGVASVPTDEPLTAPKNLSDFKLLPKRDRQLQLTKNVKQQGDSLVISASEYKEAAVSRLDSPFPDDSFVHNVSHLCTEQSSEEQVNSQIEPEERWESSPHSPGFDVLVHDELENLGYEEDSEYLQVLDRNEQELNDQYLGYEFKDPVEYDTMYPEADILYPQETYDGYRCFDRGLAHANGRTVRTYSRDIFLDSIFSRKRIRMSAEVAAAYDKNLDLRDHLRRRRENNVPPVAGFVRRQESSSLMNRNQERHQRSGIEQRPSRRLTSQLGYSAIDSIGEVETLSIANKHRLFRHSQQHRPRKHYREKPAKRPFLSSKISRKPVFKQRGFIQESTTFSGPKTLAEIKEEKKKAEEGLHWKSTSTDFQDPKPLSEILKDKRTMD* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00860 522 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Lapu3g00860 522 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Lapu3g00860 522 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Lapu3g00860 522 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Lapu3g00860 522 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Lapu3g00860 522 MobiDBLite consensus disorder prediction 124 156 - -
Lapu3g00860 522 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Lapu3g00860 522 Gene3D - 73 136 - -
Lapu3g00860 522 Gene3D - 2 63 - -
Lapu3g00860 522 MobiDBLite consensus disorder prediction 488 522 - -
Lapu3g00860 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 108 IPR000571 GO:0046872
Lapu3g00860 522 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 521 - -
Lapu3g00860 522 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Lapu3g00860 522 MobiDBLite consensus disorder prediction 379 404 - -
Lapu3g00860 522 MobiDBLite consensus disorder prediction 124 146 - -
Lapu3g00860 522 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Lapu3g00860 522 Pfam Zinc-finger containing family 7 63 IPR041686 -
Lapu3g00860 522 MobiDBLite consensus disorder prediction 384 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00860 Lapu-Chr3 9229272 9231658 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu3g00860 zf-CCCH_3 1.5e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00860 - - gmx:100813826 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00860 3 9229272 9231658 Lapu3g00860 3 9229272 9231658 ECH