Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g00854 ATGCCCTGGTCTTTTGCTTCCCCCTATGCCCCTCCCAATCACCATTCTGACTACATTCCACCTTCCTCTGACGATTCCGCTCATCGTGGCTTTCCCCGTACTGCCGGTGGCCGTGTTGGCGCTTGGCCACGCGGCGGCCGTGCTTCCTCCGGAGGTCGGGGATTCTCTCGCTCCCGCGACCATTCTCGCCGGAACTCCTGCCTCCCCGTGGAAGAACCAGAGAACGGTGATGCTATCAACTTCGACGCGTACGAGTCGGTCCCGGTGGAGGCGAGTGGAAAGGACGTGCCTCCGCCGGTGAACGTCTTCGACGATACGGACTTGGATGAAGGGTTGAAGAGGAACATCAAGCTATGCAAGTACGTGAAACCCACTCCCGTTCAGCGTCACGCGATTCCCATAGCTACCGCGGGCCGTGACCTCATGGCGTGTGCACAGACCGGTTCGGGGAAAACAGCGGCGTTTTGCTTTCCTATCTTATCTGGGATTTTGAAGGGTCGTTCCTCTTCTGGGTTTTCGCCTGTGTCTCGTGGTGCTGCTGTTGCATACCCCACTGCCCTTATTTTGTCTCCTACGAGGGAGTTGTCTTGTCAGATACGCGATGAAGCGAACAAATTTGCATTTCAAACTGGAGTGAAGGTTGTTGTTGTCTATGGTGGGTCTCCTATTATTCAGCAGCTGCGCCTTTTGGAGAAGGGTGTTGATATATTGGTTGCCACTCCTGGGCGTTTGGTGGATATTATTGATAGAGAAAGGGTTTCCTTGGCGAGGATAAAGTACCTTGCATTGGACGAAGCTGATCGTATGCTGGACATGGGTTTTGAGCAGCAAATACGCAAGATTGTGGAGAAAATGCATATGCCACCGCCAGGAATTAGGCAGACATTGTTGTTTAGTGCAACGTTCCCTGATGATATACAGAAGCTAGCATCCGACTTTTTGTCGGACTACATATTCCTGTCTGTTGGGAGAGTTGGATCGAGTACTGAACTGATTGTGCAGAAGTTTGAGCTTGTACAGGATATAGACAAAAGAGACAAACTTGTTGATCATCTTCGTCGCCAGAAGGTGCATGGGACCAGTAAGCATGCTTTAACTCTTGTATTTGTCGAAACAAAACGAGGAGCAGATGCTTTGGAAAGCTGGTTATCGAAAAGTGGTTTTCCAGCTATTGCTATACACGGAGACAAAGTTCAATTGGAAAGGGAACGGGCTTTACGATCTTTTAAATCTGGACATACTCCTATTCTGGTTGCGACCGATGTGGCTTCGAGGGGATTGGATATCCCGCATGTGGCTCATGTCATAAACTTTGACTTGCCTAGAGACATAGATGACTATGTACATAGAATTGGAAGAACAGGCCGAGCAGGCAAATCTGGTTTAGCCACTGCCTTCTTCAGCGACAAGAATAGTTCAATGGCAAAGGCCCTTGTTGGACTCTTGCAGGAGGCAAACCAAGAAGTTCCTTCTTGGCTCAACCAGTTTGCAGAGTGTTCCTCATCAGGTGGCCGTGGTCGTGGTTATGGATCACAGCGTTACAGCAGTGGTAGCAGCTATGGCGGTCGTGATTTTCGAAATTCCACTGAACCTGAAGGACAGAGTTACAACTGGTACGGTTCTCATGGCAAAGCAGATCATGGTGTAGAATCTTTTAGTACCACCTCATATGTTGATACCTCGTACGACATGCAAAACTCCCTTATAGATAACTCTTTTGACAGTTTGAATATAAACTGCAGTTATAATGAAAGTGATGATAACTCTGGTGAATTGTGTGGAGGTGGTAAGGTTGGTGAAGAGGGGCCTAGTGGTTATGCATCTATTGTTCCCACTGGATGGGACTAG 1848 0.4886 MPWSFASPYAPPNHHSDYIPPSSDDSAHRGFPRTAGGRVGAWPRGGRASSGGRGFSRSRDHSRRNSCLPVEEPENGDAINFDAYESVPVEASGKDVPPPVNVFDDTDLDEGLKRNIKLCKYVKPTPVQRHAIPIATAGRDLMACAQTGSGKTAAFCFPILSGILKGRSSSGFSPVSRGAAVAYPTALILSPTRELSCQIRDEANKFAFQTGVKVVVVYGGSPIIQQLRLLEKGVDILVATPGRLVDIIDRERVSLARIKYLALDEADRMLDMGFEQQIRKIVEKMHMPPPGIRQTLLFSATFPDDIQKLASDFLSDYIFLSVGRVGSSTELIVQKFELVQDIDKRDKLVDHLRRQKVHGTSKHALTLVFVETKRGADALESWLSKSGFPAIAIHGDKVQLERERALRSFKSGHTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSDKNSSMAKALVGLLQEANQEVPSWLNQFAECSSSGGRGRGYGSQRYSSGSSYGGRDFRNSTEPEGQSYNWYGSHGKADHGVESFSTTSYVDTSYDMQNSLIDNSFDSLNINCSYNESDDNSGELCGGGKVGEEGPSGYASIVPTGWD* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g00854 615 SMART helicmild6 377 458 IPR001650 -
Lapu3g00854 615 Pfam DEAD/DEAH box helicase 125 309 IPR011545 GO:0003676|GO:0005524
Lapu3g00854 615 FunFam ATP-dependent RNA helicase RhlB 323 501 - -
Lapu3g00854 615 CDD DEADc_DDX3_DDX4 103 326 IPR044763 GO:0003724|GO:0005524
Lapu3g00854 615 MobiDBLite consensus disorder prediction 502 539 - -
Lapu3g00854 615 FunFam Probable ATP-dependent RNA helicase DDX4 70 322 - -
Lapu3g00854 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 320 IPR014001 -
Lapu3g00854 615 MobiDBLite consensus disorder prediction 54 70 - -
Lapu3g00854 615 Pfam Helicase conserved C-terminal domain 358 458 IPR001650 -
Lapu3g00854 615 MobiDBLite consensus disorder prediction 1 76 - -
Lapu3g00854 615 Gene3D - 323 500 IPR027417 -
Lapu3g00854 615 SMART ultradead3 120 335 IPR014001 -
Lapu3g00854 615 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 76 497 - -
Lapu3g00854 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 101 129 IPR014014 GO:0003724
Lapu3g00854 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 476 IPR027417 -
Lapu3g00854 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 497 IPR001650 -
Lapu3g00854 615 Gene3D - 58 322 IPR027417 -
Lapu3g00854 615 MobiDBLite consensus disorder prediction 502 536 - -
Lapu3g00854 615 CDD SF2_C_DEAD 332 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g00854 Lapu-Chr3 9180201 9182831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g00854 103 474 Eukaryotic Initiation Factors Gene Family AT3G13920 35.389 5.95e-59 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g00854 K11594 - gmx:100791226 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g00854 3 9180201 9182831 Lapu3g00854 3 9180201 9182831 ECH